Slu7 (SLU7 homolog, splicing factor) - Rat Genome Database

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Gene: Slu7 (SLU7 homolog, splicing factor) Ictidomys tridecemlineatus
Analyze
Symbol: Slu7
Name: SLU7 homolog, splicing factor
RGD ID: 12520279
Description: ENCODES a protein that exhibits pre-mRNA 3'-splice site binding (inferred); second spliceosomal transesterification activity (inferred); zinc ion binding (inferred); INVOLVED IN alternative mRNA splicing, via spliceosome (inferred); cellular response to heat (inferred); intracellular protein transport (inferred); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH genetic disease (ortholog); Weight Gain (ortholog); FOUND IN catalytic step 2 spliceosome (inferred); cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pre-mRNA-splicing factor SLU7; SLU7 splicing factor homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213104,723,568 - 104,730,569 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365153,168,838 - 3,178,588 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365153,172,962 - 3,179,915 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Slu7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213104,723,568 - 104,730,569 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365153,168,838 - 3,178,588 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365153,172,962 - 3,179,915 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLU7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385160,401,641 - 160,419,081 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5160,401,641 - 160,421,711 (-)EnsemblGRCh38hg38GRCh38
GRCh375159,828,648 - 159,846,088 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365159,761,226 - 159,778,746 (-)NCBINCBI36Build 36hg18NCBI36
Celera5155,861,110 - 155,878,652 (-)NCBICelera
Cytogenetic Map5q33.3NCBI
HuRef5154,922,340 - 154,939,594 (-)NCBIHuRef
CHM1_15159,261,546 - 159,279,087 (-)NCBICHM1_1
T2T-CHM13v2.05160,930,130 - 160,947,593 (-)NCBIT2T-CHM13v2.0
Slu7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391143,324,550 - 43,338,809 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1143,324,571 - 43,338,808 (+)EnsemblGRCm39 Ensembl
GRCm381143,433,726 - 43,447,982 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1143,433,744 - 43,447,981 (+)EnsemblGRCm38mm10GRCm38
MGSCv371143,247,233 - 43,261,483 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361143,277,154 - 43,291,404 (+)NCBIMGSCv36mm8
Celera1148,062,245 - 48,076,494 (+)NCBICelera
Cytogenetic Map11B1.1NCBI
cM Map1125.68NCBI
Slu7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81028,406,908 - 28,425,253 (+)NCBIGRCr8
mRatBN7.21027,908,325 - 27,923,784 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1027,908,396 - 27,923,349 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1032,668,805 - 32,683,754 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0101,207,188 - 1,222,137 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01027,639,304 - 27,654,247 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01029,029,556 - 29,044,919 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1029,029,590 - 29,044,583 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01028,871,433 - 28,886,835 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41028,536,630 - 28,551,427 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11028,537,678 - 28,550,757 (+)NCBI
Celera1027,401,434 - 27,416,356 (+)NCBICelera
Cytogenetic Map10q21NCBI
Slu7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540814,267,369 - 14,288,213 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540814,268,958 - 14,288,114 (-)NCBIChiLan1.0ChiLan1.0
SLU7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24155,587,032 - 155,604,972 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15153,726,578 - 153,744,518 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05155,792,494 - 155,810,474 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15162,486,743 - 162,504,316 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5162,486,743 - 162,504,316 (-)Ensemblpanpan1.1panPan2
SLU7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1450,314,063 - 50,328,999 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl450,314,086 - 50,327,733 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha450,209,676 - 50,224,618 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0450,749,579 - 50,764,516 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl450,748,743 - 50,764,508 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1450,557,999 - 50,572,951 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0450,681,739 - 50,696,726 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0451,202,029 - 51,216,993 (+)NCBIUU_Cfam_GSD_1.0
SLU7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1663,118,733 - 63,136,640 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11663,118,426 - 63,145,655 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21668,469,349 - 68,507,713 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLU7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12362,761,466 - 62,778,613 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2362,764,335 - 62,778,910 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603414,825,845 - 14,843,018 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slu7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473329,146,579 - 29,162,074 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473329,147,329 - 29,161,687 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021726471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000015061   ⟹   ENSSTOP00000013497
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365153,168,838 - 3,178,588 (+)Ensembl
RefSeq Acc Id: XM_021726471   ⟹   XP_021582146
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213104,723,568 - 104,730,569 (+)NCBI
SpeTri2.0NW_0049365153,172,962 - 3,179,915 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021582146 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000013497.3
GenBank Protein KAG3265353 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021582146   ⟸   XM_021726471
- Sequence:
RefSeq Acc Id: ENSSTOP00000013497   ⟸   ENSSTOT00000015061
Protein Domains
Pre-mRNA-splicing factor SLU7


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015057 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015061.3 UniProtKB/TrEMBL
InterPro Slu7_dom UniProtKB/TrEMBL
  Splicing_factor_SLU7 UniProtKB/TrEMBL
NCBI Gene Slu7 ENTREZGENE
PANTHER PRE-MRNA-SPLICING FACTOR SLU7 UniProtKB/TrEMBL
  PTHR12942 UniProtKB/TrEMBL
Pfam Slu7 UniProtKB/TrEMBL
UniProt I3MP34_ICTTR UniProtKB/TrEMBL