Slc44a5 (solute carrier family 44 member 5) - Rat Genome Database

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Gene: Slc44a5 (solute carrier family 44 member 5) Ictidomys tridecemlineatus
Analyze
Symbol: Slc44a5
Name: solute carrier family 44 member 5
RGD ID: 12520175
Description: ENCODES a protein that exhibits choline transmembrane transporter activity (inferred); organic cation transmembrane transporter activity (inferred); transmembrane transporter activity (inferred); INVOLVED IN choline transport (inferred); transmembrane transport (inferred); ASSOCIATED WITH genetic disease (ortholog); medium chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: choline transporter-like protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505886,877,365 - 87,218,807 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365712,390,022 - 2,729,026 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365712,388,551 - 2,516,840 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc44a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505886,877,365 - 87,218,807 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365712,390,022 - 2,729,026 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365712,388,551 - 2,516,840 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC44A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38175,202,129 - 75,724,015 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl175,202,129 - 75,611,114 (-)EnsemblGRCh38hg38GRCh38
GRCh37175,667,814 - 76,081,848 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36175,444,868 - 75,849,359 (-)NCBINCBI36Build 36hg18NCBI36
Celera173,913,149 - 74,316,659 (-)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef173,802,694 - 74,206,558 (-)NCBIHuRef
CHM1_1175,783,194 - 76,192,037 (-)NCBICHM1_1
T2T-CHM13v2.0175,043,976 - 75,561,339 (-)NCBIT2T-CHM13v2.0
Slc44a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393153,679,056 - 153,977,384 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3153,679,073 - 153,977,359 (+)EnsemblGRCm39 Ensembl
GRCm383153,973,436 - 154,271,747 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3153,973,436 - 154,271,722 (+)EnsemblGRCm38mm10GRCm38
MGSCv373153,636,400 - 153,934,686 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363153,910,822 - 154,207,015 (+)NCBIMGSCv36mm8
Celera3160,437,074 - 160,731,740 (+)NCBICelera
Cytogenetic Map3H3- H4NCBI
cM Map378.82NCBI
Slc44a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82245,570,875 - 245,866,369 (+)NCBIGRCr8
mRatBN7.22242,911,050 - 243,208,018 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2242,911,325 - 243,206,404 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2250,967,531 - 251,028,962 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02248,861,361 - 248,922,802 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02243,760,346 - 243,821,664 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02260,185,238 - 260,535,723 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2260,249,566 - 260,535,721 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02279,063,185 - 279,199,805 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42252,123,384 - 252,176,449 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2235,074,347 - 235,135,091 (+)NCBICelera
Cytogenetic Map2q45NCBI
Slc44a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542317,422,056 - 17,617,182 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542317,260,324 - 17,615,777 (+)NCBIChiLan1.0ChiLan1.0
SLC44A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21151,169,214 - 151,683,783 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11150,329,656 - 150,844,218 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0174,424,615 - 74,831,322 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1176,398,494 - 76,799,674 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl176,402,967 - 76,729,900 (-)Ensemblpanpan1.1panPan2
SLC44A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1670,955,420 - 71,295,552 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl670,929,413 - 71,285,340 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha673,620,330 - 73,959,054 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0671,548,204 - 71,887,932 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl671,542,624 - 71,876,341 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1671,044,390 - 71,383,323 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0670,989,982 - 71,328,635 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0671,483,386 - 71,823,397 (+)NCBIUU_Cfam_GSD_1.0
SLC44A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6137,682,312 - 138,009,865 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16137,595,296 - 138,009,530 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26127,567,738 - 127,974,051 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC44A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12057,583,690 - 57,978,406 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2057,908,420 - 57,973,904 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603359,492,986 - 60,040,482 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc44a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474221,555,828 - 21,610,197 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474221,258,331 - 21,610,174 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021730120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000023592   ⟹   ENSSTOP00000021982
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365712,390,022 - 2,729,026 (-)Ensembl
RefSeq Acc Id: XM_021730120   ⟹   XP_021585795
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505886,877,365 - 87,218,807 (-)NCBI
SpeTri2.0NW_0049365712,388,551 - 2,516,840 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021585795 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000021982.2
GenBank Protein KAG3283391 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021585795   ⟸   XM_021730120
- UniProtKB: I3NC85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000021982   ⟸   ENSSTOT00000023592


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006287 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000023592.2 UniProtKB/TrEMBL
InterPro Choline_transptr-like UniProtKB/TrEMBL
NCBI Gene Slc44a5 ENTREZGENE
PANTHER CHOLINE TRANSPORTER-LIKE PROTEIN 5 UniProtKB/TrEMBL
  PTHR12385 UniProtKB/TrEMBL
Pfam Choline_transpo UniProtKB/TrEMBL
UniProt I3NC85 ENTREZGENE, UniProtKB/TrEMBL