Cimap1a (ciliary microtubule associated protein 1A) - Rat Genome Database

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Gene: Cimap1a (ciliary microtubule associated protein 1A) Ictidomys tridecemlineatus
Analyze
Symbol: Cimap1a
Name: ciliary microtubule associated protein 1A (Ensembl:outer dense fiber of sperm tails 3)
RGD ID: 12519335
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoskeleton (inferred); outer dense fiber (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Odf3; outer dense fiber of sperm tails 3; outer dense fiber of sperm tails 3, transcript variant X1; outer dense fiber of sperm tails 3, transcript variant X2; outer dense fiber protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494747,628 - 50,930 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493688847,707 - 50,757 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493688848,217 - 50,747 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cimap1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494747,628 - 50,930 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493688847,707 - 50,757 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493688848,217 - 50,747 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIMAP1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811196,761 - 200,258 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11196,761 - 200,261 (+)EnsemblGRCh38hg38GRCh38
GRCh3711196,761 - 200,258 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611186,761 - 190,258 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411186,760 - 190,256NCBI
Celera11358,619 - 362,119 (-)NCBICelera
Cytogenetic Map11p15.5NCBI
HuRef1116,761 - 20,261 (+)NCBIHuRef
CHM1_111195,412 - 198,912 (+)NCBICHM1_1
T2T-CHM13v2.011237,936 - 241,436 (+)NCBIT2T-CHM13v2.0
Cimap1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397140,427,829 - 140,430,838 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7140,427,718 - 140,430,931 (+)EnsemblGRCm39 Ensembl
GRCm387140,847,916 - 140,850,925 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7140,847,805 - 140,851,018 (+)EnsemblGRCm38mm10GRCm38
MGSCv377148,033,815 - 148,036,824 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367140,699,146 - 140,702,327 (+)NCBIMGSCv36mm8
Celera7140,640,202 - 140,643,211 (+)NCBICelera
Cytogenetic Map7F4NCBI
cM Map786.05NCBI
Cimap1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81205,355,601 - 205,358,882 (+)NCBIGRCr8
mRatBN7.21195,926,034 - 195,929,250 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1195,926,041 - 195,929,248 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1204,278,498 - 204,281,705 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01211,405,408 - 211,408,615 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01204,079,260 - 204,082,467 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01213,596,784 - 213,602,417 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,597,478 - 213,600,685 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01220,522,205 - 220,526,036 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41201,005,362 - 201,008,569 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11201,155,828 - 201,158,330 (+)NCBI
Celera1193,569,987 - 193,573,194 (+)NCBICelera
Cytogenetic Map1q41NCBI
Cimap1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547611,837,758 - 11,841,058 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547611,837,758 - 11,841,059 (-)NCBIChiLan1.0ChiLan1.0
CIMAP1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v292,563,025 - 2,566,536 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1111,718,983 - 1,722,494 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011191,149 - 194,647 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111236,782 - 240,280 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11236,782 - 240,280 (+)Ensemblpanpan1.1panPan2
CIMAP1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11825,353,822 - 25,357,399 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1825,354,394 - 25,357,367 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1825,003,767 - 25,007,332 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01825,880,361 - 25,883,929 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1825,880,965 - 25,883,941 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11825,448,387 - 25,451,953 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01825,093,169 - 25,096,735 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01825,705,977 - 25,709,542 (+)NCBIUU_Cfam_GSD_1.0
CIMAP1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl221,683 - 25,149 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1220,869 - 25,845 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22162,199,365 - 162,202,944 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CIMAP1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114,916 - 10,379 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl17,313 - 10,166 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603897,022,256 - 97,025,091 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cimap1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476622,246,047 - 22,248,968 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476622,245,129 - 22,249,938 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000015034   ⟹   ENSSTOP00000013471
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493688847,707 - 50,757 (+)Ensembl
RefSeq Acc Id: XM_021721030   ⟹   XP_021576705
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494747,629 - 50,930 (+)NCBI
SpeTri2.0NW_00493688848,217 - 50,747 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040283849   ⟹   XP_040139783
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494747,628 - 50,930 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021576705 (Get FASTA)   NCBI Sequence Viewer  
  XP_040139783 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000013471.3
GenBank Protein KAG3284272 (Get FASTA)   NCBI Sequence Viewer  
  KAG3284273 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021576705   ⟸   XM_021721030
- Peptide Label: isoform X2
- UniProtKB: I3MP18 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040139783   ⟸   XM_040283849
- Peptide Label: isoform X1
RefSeq Acc Id: ENSSTOP00000013471   ⟸   ENSSTOT00000015034


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015032 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015034.3 UniProtKB/TrEMBL
InterPro SHIPPO-rpt UniProtKB/TrEMBL
NCBI Gene Odf3 ENTREZGENE
PANTHER OUTER DENSE FIBER PROTEIN 3 UniProtKB/TrEMBL
  SHIPPO-1-RELATED UniProtKB/TrEMBL
Pfam SHIPPO-rpt UniProtKB/TrEMBL
UniProt I3MP18 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-02 Cimap1a  ciliary microtubule associated protein 1A  Odf3  outer dense fiber of sperm tails 3  Symbol and/or name change 5135510 APPROVED