Extl3 (exostosin like glycosyltransferase 3) - Rat Genome Database

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Gene: Extl3 (exostosin like glycosyltransferase 3) Ictidomys tridecemlineatus
Analyze
Symbol: Extl3
Name: exostosin like glycosyltransferase 3
RGD ID: 12519266
Description: ENCODES a protein that exhibits glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity (inferred); glycosyltransferase activity (inferred); magnesium ion binding (inferred); INVOLVED IN negative regulation of cytokine production involved in inflammatory response (ortholog); negative regulation of inflammatory response (ortholog); positive regulation of cell growth (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); genetic disease (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: exostosin-like 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049437,108,930 - 7,137,757 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366751,448,366 - 1,477,216 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366751,448,381 - 1,479,735 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Extl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049437,108,930 - 7,137,757 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366751,448,366 - 1,477,216 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366751,448,381 - 1,479,735 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EXTL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38828,607,736 - 28,755,599 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl828,600,469 - 28,756,561 (+)EnsemblGRCh38hg38GRCh38
GRCh37828,559,018 - 28,613,116 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36828,615,072 - 28,667,121 (+)NCBINCBI36Build 36hg18NCBI36
Build 34828,615,071 - 28,667,121NCBI
Celera827,519,006 - 27,571,052 (+)NCBICelera
Cytogenetic Map8p21.1NCBI
HuRef827,104,516 - 27,156,747 (+)NCBIHuRef
CHM1_1828,761,018 - 28,813,245 (+)NCBICHM1_1
T2T-CHM13v2.0828,885,904 - 29,033,822 (+)NCBIT2T-CHM13v2.0
Extl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391465,289,508 - 65,387,322 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1465,289,509 - 65,387,304 (-)EnsemblGRCm39 Ensembl
GRCm381465,052,059 - 65,149,899 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1465,052,060 - 65,149,855 (-)EnsemblGRCm38mm10GRCm38
MGSCv371465,670,896 - 65,716,943 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361464,006,173 - 64,034,585 (-)NCBIMGSCv36mm8
Celera1462,814,500 - 62,860,622 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.86NCBI
Extl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81543,469,293 - 43,559,760 (-)NCBIGRCr8
mRatBN7.21539,294,033 - 39,384,086 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1539,293,605 - 39,338,898 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1541,159,992 - 41,183,433 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01542,310,683 - 42,334,125 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01540,756,090 - 40,779,885 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01548,420,419 - 48,465,171 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1548,422,492 - 48,445,592 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01552,167,241 - 52,307,996 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41544,400,139 - 44,424,584 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11544,415,838 - 44,440,284 (-)NCBI
Celera1538,971,658 - 38,994,995 (-)NCBICelera
Cytogenetic Map15p12NCBI
Extl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540351,076,319 - 51,102,435 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540351,076,323 - 51,102,435 (+)NCBIChiLan1.0ChiLan1.0
EXTL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2747,141,178 - 47,300,524 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1822,877,190 - 23,013,515 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0827,983,700 - 28,035,879 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1825,079,531 - 25,233,599 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl825,174,414 - 25,233,599 (+)Ensemblpanpan1.1panPan2
EXTL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12528,788,803 - 28,833,964 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2528,790,506 - 28,937,647 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2529,437,368 - 29,587,684 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02528,944,632 - 29,095,861 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2528,944,637 - 29,029,690 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12528,905,043 - 29,055,721 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02528,790,655 - 28,940,548 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02528,953,232 - 29,105,065 (-)NCBIUU_Cfam_GSD_1.0
EXTL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1412,437,515 - 12,563,544 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11412,437,551 - 12,563,548 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21413,660,607 - 13,712,760 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EXTL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1826,729,772 - 26,861,953 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl826,821,141 - 26,864,926 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605215,268,419 - 15,404,953 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Extl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475823,324,512 - 23,368,584 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475823,257,623 - 23,370,782 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Sequence


Ensembl Acc Id: ENSSTOT00000028636   ⟹   ENSSTOP00000019571
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366751,448,366 - 1,477,216 (+)Ensembl
RefSeq Acc Id: XM_005337222   ⟹   XP_005337279
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049437,108,930 - 7,137,757 (-)NCBI
SpeTri2.0NW_0049366751,448,381 - 1,479,735 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040292272   ⟹   XP_040148206
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049437,108,930 - 7,137,751 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005337279 (Get FASTA)   NCBI Sequence Viewer  
  XP_040148206 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000019571.1
GenBank Protein KAG3294297 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005337279   ⟸   XM_005337222
- UniProtKB: I3N5C5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040148206   ⟸   XM_040292272
- UniProtKB: I3N5C5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000019571   ⟸   ENSSTOT00000028636
Protein Domains
Exostosin GT47   Glycosyl transferase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000019391 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028636.2 UniProtKB/TrEMBL
InterPro Exostosin UniProtKB/TrEMBL
  Exostosin_GT47 UniProtKB/TrEMBL
  GT64 UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
NCBI Gene Extl3 ENTREZGENE
PANTHER ACETYLGLUCOSAMINYLTRANSFERASE UniProtKB/TrEMBL
  ACETYLGLUCOSAMINYLTRANSFERASE UniProtKB/TrEMBL
Pfam Exostosin UniProtKB/TrEMBL
  Glyco_transf_64 UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt I3N5C5 ENTREZGENE, UniProtKB/TrEMBL