Mixl1 (Mix paired-like homeobox) - Rat Genome Database

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Gene: Mixl1 (Mix paired-like homeobox) Ictidomys tridecemlineatus
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Symbol: Mixl1
Name: Mix paired-like homeobox
RGD ID: 12518945
Description: ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); INVOLVED IN cell migration involved in gastrulation (ortholog); digestive tract development (ortholog); endoderm development (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: homeobox protein MIXL1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934451,756,331 - 51,762,377 (-)NCBI
SpeTri2.0NW_0049365262,984,900 - 2,989,494 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Mixl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934451,756,331 - 51,762,377 (-)NCBI
SpeTri2.0NW_0049365262,984,900 - 2,989,494 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MIXL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1226,223,618 - 226,227,054 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1226,223,618 - 226,227,060 (+)EnsemblGRCh38hg38GRCh38
GRCh381226,223,664 - 226,227,060 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371226,411,365 - 226,414,761 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361224,478,006 - 224,480,136 (+)NCBINCBI36hg18NCBI36
Build 341222,718,117 - 222,720,248NCBI
Celera1199,602,144 - 199,604,274 (+)NCBI
Cytogenetic Map1q42.12NCBI
HuRef1196,928,386 - 196,930,516 (+)NCBIHuRef
CHM1_11227,684,062 - 227,687,491 (+)NCBICHM1_1
Mixl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,520,608 - 180,524,599 (-)NCBIGRCm39mm39
GRCm39 Ensembl1180,520,608 - 180,524,599 (-)Ensembl
GRCm381180,693,043 - 180,697,034 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,693,043 - 180,697,034 (-)EnsemblGRCm38mm10GRCm38
MGSCv371182,623,174 - 182,627,165 (-)NCBIGRCm37mm9NCBIm37
MGSCv361182,529,718 - 182,533,709 (-)NCBImm8
Celera1187,754,505 - 187,758,493 (-)NCBICelera
Cytogenetic Map1H4NCBI
Mixl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21392,422,031 - 92,426,065 (-)NCBI
Rnor_6.0 Ensembl1397,278,258 - 97,282,299 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1398,973,041 - 98,975,426 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01397,278,258 - 97,282,299 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.013103,973,473 - 103,977,504 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41396,427,597 - 96,431,628 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11396,618,156 - 96,620,542 (-)NCBI
Celera1391,967,784 - 91,971,815 (-)NCBICelera
Cytogenetic Map13q26NCBI
Mixl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955489418,650 - 422,428 (+)NCBIChiLan1.0ChiLan1.0
MIXL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11206,671,344 - 206,679,904 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01201,682,488 - 201,686,358 (+)NCBIMhudiblu_PPA_v0panPan3
MIXL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1738,651,481 - 38,652,560 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha738,132,918 - 38,135,788 (-)NCBI
ROS_Cfam_1.0738,485,283 - 38,487,650 (-)NCBI
UMICH_Zoey_3.1738,323,946 - 38,326,305 (-)NCBI
UNSW_CanFamBas_1.0738,330,845 - 38,333,218 (-)NCBI
UU_Cfam_GSD_1.0738,602,254 - 38,605,581 (-)NCBI
MIXL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1014,102,395 - 14,104,982 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11014,102,273 - 14,105,544 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21015,667,360 - 15,670,704 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MIXL1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1253,542,923 - 3,546,561 (-)NCBI
ChlSab1.1 Ensembl253,544,169 - 3,546,305 (-)Ensembl
Mixl1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624807322,723 - 325,089 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005326540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005326540   ⟹   XP_005326597
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934451,756,331 - 51,762,377 (-)NCBI
SpeTri2.0NW_0049365262,984,900 - 2,989,494 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005326597 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005326597   ⟸   XM_005326540
- Sequence:
Protein Domains
Homeobox


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000019392 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000019739 UniProtKB/TrEMBL
  ENSSTOP00000025403 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024234 UniProtKB/TrEMBL
  ENSSTOT00000031795 UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  MIXL1 UniProtKB/TrEMBL
NCBI Gene Mixl1 ENTREZGENE
PANTHER PTHR47656 UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A287CVV7_ICTTR UniProtKB/TrEMBL
  I3N5U3_ICTTR UniProtKB/TrEMBL