Papolg (poly(A) polymerase gamma) - Rat Genome Database

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Gene: Papolg (poly(A) polymerase gamma) Ictidomys tridecemlineatus
Analyze
Symbol: Papolg
Name: poly(A) polymerase gamma
RGD ID: 12517732
Description: ENCODES a protein that exhibits ATP binding (inferred); metal ion binding (inferred); poly(A) RNA polymerase activity (inferred); INVOLVED IN mRNA processing (inferred); RNA 3'-end processing (inferred); PARTICIPATES IN 3'-end pre-mRNA processing pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytosol (inferred); nuclear body (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629222,250,508 - 22,286,097 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364916,285,206 - 6,322,668 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364916,285,209 - 6,320,646 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)
nuclear body  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Papolg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629222,250,508 - 22,286,097 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364916,285,206 - 6,322,668 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364916,285,209 - 6,320,646 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAPOLG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38260,756,268 - 60,802,086 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl260,756,253 - 60,802,086 (+)EnsemblGRCh38hg38GRCh38
GRCh37260,983,403 - 61,029,221 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36260,836,887 - 60,879,602 (+)NCBINCBI36Build 36hg18NCBI36
Build 34260,895,033 - 60,937,747NCBI
Celera260,826,967 - 60,872,820 (+)NCBICelera
Cytogenetic Map2p16.1NCBI
HuRef260,725,544 - 60,771,413 (+)NCBIHuRef
CHM1_1260,913,785 - 60,959,664 (+)NCBICHM1_1
T2T-CHM13v2.0260,762,056 - 60,807,916 (+)NCBIT2T-CHM13v2.0
Papolg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391123,810,145 - 23,845,292 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1123,812,646 - 23,845,253 (-)EnsemblGRCm39 Ensembl
GRCm381123,860,145 - 23,895,293 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1123,862,646 - 23,895,253 (-)EnsemblGRCm38mm10GRCm38
MGSCv371123,762,646 - 23,795,270 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361123,762,665 - 23,795,253 (-)NCBIMGSCv36mm8
Celera1125,984,007 - 26,016,631 (-)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.37NCBI
Papolg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814102,028,842 - 102,062,155 (-)NCBIGRCr8
mRatBN7.21497,827,712 - 97,861,024 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1497,827,712 - 97,861,024 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14102,153,429 - 102,186,565 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014103,397,660 - 103,430,794 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01499,869,339 - 99,902,473 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014108,624,359 - 108,658,371 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14108,624,359 - 108,658,371 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014108,346,030 - 108,380,042 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414104,800,058 - 104,833,509 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114104,819,267 - 104,852,722 (-)NCBI
Celera1496,796,350 - 96,827,229 (-)NCBICelera
Cytogenetic Map14q22NCBI
Papolg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542423,003,107 - 23,034,412 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542423,005,942 - 23,034,360 (-)NCBIChiLan1.0ChiLan1.0
PAPOLG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21265,571,229 - 65,622,291 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A65,583,940 - 65,626,242 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A60,846,593 - 60,892,462 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A61,988,572 - 62,030,291 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A61,988,572 - 62,030,291 (+)Ensemblpanpan1.1panPan2
PAPOLG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11060,879,161 - 60,910,417 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1060,879,037 - 60,907,498 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1060,767,357 - 60,797,232 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01061,885,805 - 61,915,710 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1061,885,804 - 61,917,460 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11061,585,901 - 61,615,753 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01061,873,384 - 61,903,454 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01062,165,588 - 62,195,664 (+)NCBIUU_Cfam_GSD_1.0
PAPOLG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl380,986,402 - 81,025,293 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1380,986,395 - 81,025,369 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2385,081,488 - 85,116,907 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PAPOLG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11446,193,350 - 46,237,078 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1446,189,698 - 46,237,059 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604565,563,753 - 65,610,061 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Papolg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248331,133,462 - 1,159,684 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248331,134,200 - 1,163,341 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000010871   ⟹   ENSSTOP00000009753
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364916,285,206 - 6,322,668 (+)Ensembl
RefSeq Acc Id: XM_005322037   ⟹   XP_005322094
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629222,250,508 - 22,286,097 (-)NCBI
SpeTri2.0NW_0049364916,285,209 - 6,320,646 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040271017   ⟹   XP_040126951
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629222,250,508 - 22,286,097 (-)NCBI
RefSeq Acc Id: XM_040271018   ⟹   XP_040126952
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629222,264,282 - 22,286,097 (-)NCBI
RefSeq Acc Id: XR_005727269
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629222,257,830 - 22,286,097 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005322094 (Get FASTA)   NCBI Sequence Viewer  
  XP_040126951 (Get FASTA)   NCBI Sequence Viewer  
  XP_040126952 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000009753.3
GenBank Protein KAG3267285 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005322094   ⟸   XM_005322037
- Peptide Label: isoform X1
- UniProtKB: I3MG96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040126951   ⟸   XM_040271017
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040126952   ⟸   XM_040271018
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000009753   ⟸   ENSSTOT00000010871
Protein Domains
Poly(A) polymerase central   Poly(A) polymerase nucleotidyltransferase   Poly(A) polymerase RNA-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010861 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010871.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1410.10 UniProtKB/TrEMBL
  3.30.460.10 UniProtKB/TrEMBL
  Poly(A) polymerase predicted RNA binding domain UniProtKB/TrEMBL
InterPro NT_sf UniProtKB/TrEMBL
  NuclTrfase_I-like_C UniProtKB/TrEMBL
  PolA_pol_cen_dom UniProtKB/TrEMBL
  PolA_pol_NTPase UniProtKB/TrEMBL
  PolA_pol_RNA-bd_dom UniProtKB/TrEMBL
NCBI Gene Papolg ENTREZGENE
PANTHER POLY A POLYMERASE UniProtKB/TrEMBL
  POLY(A) POLYMERASE GAMMA UniProtKB/TrEMBL
Pfam PAP_central UniProtKB/TrEMBL
  PAP_NTPase UniProtKB/TrEMBL
  PAP_RNA-bind UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
Superfamily-SCOP PAP/OAS1 substrate-binding domain UniProtKB/TrEMBL
  SSF55003 UniProtKB/TrEMBL
  SSF81301 UniProtKB/TrEMBL
UniProt I3MG96 ENTREZGENE, UniProtKB/TrEMBL