Slc38a3 (solute carrier family 38 member 3) - Rat Genome Database

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Gene: Slc38a3 (solute carrier family 38 member 3) Ictidomys tridecemlineatus
Analyze
Symbol: Slc38a3
Name: solute carrier family 38 member 3
RGD ID: 12515845
Description: ENCODES a protein that exhibits L-alanine transmembrane transporter activity (ortholog); L-asparagine transmembrane transporter activity (ortholog); L-glutamine transmembrane transporter activity (ortholog); INVOLVED IN asparagine transport (ortholog); brain development (ortholog); cellular response to potassium ion starvation (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); Dwarfism (ortholog); Endotoxemia (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); integral component of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: sodium-coupled neutral amino acid transporter 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,989,382 - 65,005,427 (+)NCBI
SpeTri2.0NW_0049365291,749,919 - 1,765,885 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Slc38a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,989,382 - 65,005,427 (+)NCBI
SpeTri2.0NW_0049365291,749,919 - 1,765,885 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC38A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl350,205,246 - 50,221,486 (+)EnsemblGRCh38hg38GRCh38
GRCh38350,205,268 - 50,221,486 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37350,242,704 - 50,258,918 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36350,217,696 - 50,233,410 (+)NCBINCBI36hg18NCBI36
Build 34350,217,708 - 50,233,406NCBI
Celera350,215,521 - 50,231,235 (+)NCBI
Cytogenetic Map3p21.31NCBI
HuRef350,298,378 - 50,314,094 (+)NCBIHuRef
CHM1_1350,194,967 - 50,210,681 (+)NCBICHM1_1
Slc38a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,528,353 - 107,546,167 (-)NCBIGRCm39mm39
GRCm39 Ensembl9107,527,833 - 107,546,729 (-)Ensembl
GRCm389107,651,154 - 107,668,968 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,650,634 - 107,669,530 (-)EnsemblGRCm38mm10GRCm38
MGSCv379107,553,486 - 107,569,705 (-)NCBIGRCm37mm9NCBIm37
MGSCv369107,509,256 - 107,525,475 (-)NCBImm8
Celera9107,256,617 - 107,273,287 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map958.69NCBI
Slc38a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28108,323,889 - 108,339,959 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl8108,323,894 - 108,339,988 (-)Ensembl
Rnor_6.08116,406,258 - 116,423,752 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,406,241 - 116,422,366 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08115,761,368 - 115,779,081 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48112,898,405 - 112,914,444 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18112,917,859 - 112,933,899 (-)NCBI
Celera8107,630,163 - 107,646,202 (-)NCBICelera
Cytogenetic Map8q32NCBI
Slc38a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555322,023,694 - 2,050,708 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555322,023,694 - 2,046,556 (+)NCBIChiLan1.0ChiLan1.0
SLC38A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1351,367,939 - 51,383,657 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl351,367,939 - 51,383,657 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0350,133,631 - 50,149,394 (+)NCBIMhudiblu_PPA_v0panPan3
SLC38A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,108,387 - 39,122,526 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,109,211 - 39,114,849 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2039,029,425 - 39,043,601 (-)NCBI
ROS_Cfam_1.02039,464,652 - 39,478,831 (-)NCBI
UMICH_Zoey_3.12038,832,227 - 38,846,403 (-)NCBI
UNSW_CanFamBas_1.02039,236,334 - 39,250,516 (-)NCBI
UU_Cfam_GSD_1.02039,515,831 - 39,530,233 (-)NCBI
SLC38A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,683,191 - 32,704,535 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,683,131 - 32,699,803 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,861,884 - 35,878,403 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC38A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12211,591,680 - 11,606,291 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2211,591,717 - 11,606,355 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041155,378,802 - 155,395,004 (-)NCBIVero_WHO_p1.0
Slc38a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247304,078,084 - 4,092,330 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005326946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005326946   ⟹   XP_005327003
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560264,989,382 - 65,005,427 (+)NCBI
SpeTri2.0NW_0049365291,749,919 - 1,765,885 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005327003 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3270518 (Get FASTA)   NCBI Sequence Viewer  
  KAG3270519 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005327003   ⟸   XM_005326946
- UniProtKB: I3MR33 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016192 ENTREZGENE
Ensembl Protein ENSSTOP00000014498 ENTREZGENE
NCBI Gene Slc38a3 ENTREZGENE
UniProt I3MR33 ENTREZGENE