Cd84 (CD84 molecule) - Rat Genome Database

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Gene: Cd84 (CD84 molecule) Ictidomys tridecemlineatus
Analyze
Symbol: Cd84
Name: CD84 molecule
RGD ID: 12514705
Description: ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN negative regulation of interleukin-10 production (ortholog); positive regulation of MAPK cascade (ortholog); regulation of lipopolysaccharide-mediated signaling pathway (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN external side of plasma membrane (inferred); intracellular membrane-bounded organelle (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SLAM family member 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050586,620,544 - 6,643,254 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936740123,885 - 134,097 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936740111,296 - 133,847 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cd84
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050586,620,544 - 6,643,254 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936740123,885 - 134,097 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936740111,296 - 133,847 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD84
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381160,541,098 - 160,579,496 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1160,541,095 - 160,579,516 (-)EnsemblGRCh38hg38GRCh38
GRCh371160,510,888 - 160,549,286 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361158,782,419 - 158,815,889 (-)NCBINCBI36Build 36hg18NCBI36
Build 341157,328,867 - 157,362,336NCBI
Celera1133,579,617 - 133,618,049 (-)NCBICelera
Cytogenetic Map1q23.3NCBI
HuRef1131,867,102 - 131,905,535 (-)NCBIHuRef
CHM1_11161,906,252 - 161,944,676 (-)NCBICHM1_1
T2T-CHM13v2.01159,678,187 - 159,716,598 (-)NCBIT2T-CHM13v2.0
Cd84
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,667,261 - 171,718,288 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1171,667,265 - 171,718,285 (+)EnsemblGRCm39 Ensembl
GRCm381171,839,697 - 171,890,718 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,839,697 - 171,890,718 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,770,710 - 173,820,849 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,677,279 - 173,725,361 (+)NCBIMGSCv36mm8
Celera1174,696,562 - 174,739,215 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.54NCBI
Cd84
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81386,859,979 - 86,899,984 (+)NCBIGRCr8
mRatBN7.21384,327,580 - 84,367,153 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1384,327,553 - 84,362,076 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1386,850,078 - 86,864,481 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01388,250,353 - 88,264,756 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01385,435,450 - 85,449,892 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01390,241,369 - 90,283,625 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1390,244,681 - 90,277,865 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013101,522,740 - 101,523,225 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01394,797,653 - 94,800,870 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41387,846,411 - 87,859,987 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1383,959,458 - 83,973,468 (+)NCBICelera
Cytogenetic Map13q24NCBI
Cd84
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546812,281,686 - 12,313,912 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546812,280,467 - 12,313,976 (-)NCBIChiLan1.0ChiLan1.0
CD84
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2189,271,292 - 89,309,619 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1189,011,316 - 89,049,628 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01135,901,375 - 135,934,791 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11139,819,254 - 139,857,559 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1139,819,254 - 139,857,559 (-)Ensemblpanpan1.1panPan2
CD84
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13821,702,788 - 21,727,373 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3821,702,494 - 21,759,668 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3821,777,612 - 21,801,443 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03821,820,016 - 21,843,908 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3821,819,868 - 21,884,990 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13821,707,065 - 21,730,941 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03822,121,158 - 22,144,967 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03822,530,871 - 22,554,757 (+)NCBIUU_Cfam_GSD_1.0
CD84
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl489,932,229 - 89,969,665 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1489,932,020 - 89,980,476 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2497,824,304 - 97,869,262 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD84
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1203,358,751 - 3,397,075 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl203,358,827 - 3,389,895 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660382,409,457 - 2,447,217 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd84
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624794709,235 - 740,846 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624794709,169 - 742,591 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021735995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000028550   ⟹   ENSSTOP00000020932
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936740123,885 - 134,097 (+)Ensembl
RefSeq Acc Id: XM_021735995   ⟹   XP_021591670
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050586,620,544 - 6,643,254 (-)NCBI
SpeTri2.0NW_004936740111,296 - 133,847 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021591670 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000020932.2
GenBank Protein KAG3281062 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021591670   ⟸   XM_021735995
- UniProtKB: I3N986 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000020932   ⟸   ENSSTOT00000028550
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007218 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028550.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
NCBI Gene Cd84 ENTREZGENE
PANTHER SIGNALING LYMPHOCYTIC ACTIVATION MOLECULE UniProtKB/TrEMBL
  SLAM FAMILY MEMBER 5 UniProtKB/TrEMBL
Pfam Ig_3 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt I3N986 ENTREZGENE, UniProtKB/TrEMBL