Ajm1 (apical junction component 1 homolog) - Rat Genome Database

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Gene: Ajm1 (apical junction component 1 homolog) Ictidomys tridecemlineatus
Analyze
Symbol: Ajm1
Name: apical junction component 1 homolog
RGD ID: 12514235
Description: INVOLVED IN cell-cell junction organization (inferred); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN apical junction complex (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown C9orf172 homolog; chromosome unknown open reading frame, human C9orf172; CUNH9orf172; LOC101959653; uncharacterized protein C9orf172 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,299,654 - 202,307,805 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366691,069,266 - 1,072,187 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366691,065,901 - 1,075,493 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ajm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,299,654 - 202,307,805 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366691,069,266 - 1,072,187 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366691,065,901 - 1,075,493 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AJM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389136,842,478 - 136,848,801 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9136,842,478 - 136,848,801 (+)EnsemblGRCh38hg38GRCh38
GRCh379139,736,930 - 139,743,253 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369138,858,688 - 138,861,618 (+)NCBINCBI36Build 36hg18NCBI36
Celera9110,252,657 - 110,255,587 (+)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9109,198,194 - 109,200,927 (+)NCBIHuRef
CHM1_19139,887,585 - 139,890,540 (+)NCBICHM1_1
T2T-CHM13v2.09149,076,680 - 149,083,003 (+)NCBIT2T-CHM13v2.0
Ajm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,465,428 - 25,471,760 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,465,428 - 25,471,769 (-)EnsemblGRCm39 Ensembl
GRCm38225,575,416 - 25,580,099 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,575,416 - 25,581,757 (-)EnsemblGRCm38mm10GRCm38
MGSCv37225,430,936 - 25,435,619 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36225,397,439 - 25,402,108 (-)NCBIMGSCv36mm8
Celera225,303,168 - 25,308,280 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map217.44NCBI
Ajm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,793,078 - 28,799,459 (-)NCBIGRCr8
mRatBN7.238,394,942 - 8,401,323 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,392,889 - 8,401,321 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx311,500,119 - 11,506,498 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0320,086,345 - 20,092,724 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0318,276,191 - 18,282,570 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,799,032 - 2,806,686 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,800,650 - 2,803,574 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.032,780,466 - 2,786,901 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,747,858 - 3,753,313 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera33,219,872 - 3,227,526 (-)NCBICelera
Cytogenetic Map3p13NCBI
Ajm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555134,924,620 - 4,930,850 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555134,924,344 - 4,930,850 (+)NCBIChiLan1.0ChiLan1.0
AJM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2112,553,821 - 2,561,305 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan192,556,156 - 2,563,629 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09107,898,222 - 107,908,125 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19136,868,177 - 136,873,463 (+)NCBIpanpan1.1PanPan1.1panPan2
AJM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,738,344 - 48,744,604 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,953,245 - 47,958,194 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,617,670 - 49,622,620 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,617,779 - 49,620,706 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1948,393,892 - 48,398,843 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,692,593 - 48,697,544 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,739,564 - 48,744,517 (-)NCBIUU_Cfam_GSD_1.0
AJM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,341,804 - 1,347,981 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl121,341,927 - 1,344,854 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660583,927,404 - 3,934,891 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ajm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247601,001,590 - 1,007,530 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247601,002,860 - 1,008,527 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000025093   ⟹   ENSSTOP00000021295
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366691,069,266 - 1,072,187 (-)Ensembl
RefSeq Acc Id: XM_021734336   ⟹   XP_021590011
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947202,299,654 - 202,307,372 (+)NCBI
SpeTri2.0NW_0049366691,065,901 - 1,075,493 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040286666   ⟹   XP_040142600
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947202,299,654 - 202,307,372 (+)NCBI
RefSeq Acc Id: XM_040286667   ⟹   XP_040142601
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947202,299,654 - 202,307,372 (+)NCBI
RefSeq Acc Id: XM_040286668   ⟹   XP_040142602
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947202,299,654 - 202,307,372 (+)NCBI
RefSeq Acc Id: XR_005734216
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947202,299,654 - 202,307,805 (+)NCBI
RefSeq Acc Id: XP_021590011   ⟸   XM_021734336
- UniProtKB: I3NA98 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040142601   ⟸   XM_040286667
- UniProtKB: I3NA98 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040142600   ⟸   XM_040286666
- UniProtKB: I3NA98 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040142602   ⟸   XM_040286668
- UniProtKB: I3NA98 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000021295   ⟸   ENSSTOT00000025093


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026589 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000025093.1 UniProtKB/TrEMBL
InterPro Apical_junction UniProtKB/TrEMBL
NCBI Gene LOC101959653 ENTREZGENE
PANTHER APICAL JUNCTION COMPONENT 1 HOMOLOG UniProtKB/TrEMBL
  PTHR21517 UniProtKB/TrEMBL
UniProt I3NA98 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-10-10 Ajm1  apical junction component 1 homolog  CUNH9orf172  chromosome unknown C9orf172 homolog  Symbol and/or name change 5135510 APPROVED
2017-07-13 CUNH9orf172  chromosome unknown C9orf172 homolog  LOC101959653  chromosome unknown open reading frame, human C9orf172  Symbol and/or name change 5135510 APPROVED