Znf473 (zinc finger protein 473) - Rat Genome Database

Name: Znf473
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Znf473 (zinc finger protein 473) Ictidomys tridecemlineatus

Analyze

Symbol:

Znf473

Name:

zinc finger protein 473

RGD ID:

12513232

Description:

ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); INVOLVED IN negative regulation of transcription initiation by RNA polymerase II (ortholog); ASSOCIATED WITH breast ductal carcinoma (ortholog); genetic disease (ortholog); invasive ductal carcinoma (ortholog); FOUND IN Cajal body (inferred); nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	22,163,745 - 22,180,078 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936889	41,119 - 57,582 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936889	39,812 - 56,052 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

breast ductal carcinoma (ISO)

genetic disease (ISO)

invasive ductal carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA 3'-end processing by stem-loop binding and cleavage (IEA)

negative regulation of transcription initiation by RNA polymerase II (ISO)

regulation of DNA-templated transcription (IEA)

Cellular Component

Cajal body (IEA)

nucleoplasm (IEA)

Molecular Function

DNA-binding transcription factor binding (ISO)

DNA-binding transcription repressor activity, RNA polymerase II-specific (IEA)

metal ion binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Znf473
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	22,163,745 - 22,180,078 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936889	41,119 - 57,582 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936889	39,812 - 56,052 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF473
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	50,026,005 - 50,048,776 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	50,025,714 - 50,053,414 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	50,529,262 - 50,552,033 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	55,221,024 - 55,243,845 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	47,398,472 - 47,421,294 (+)	NCBI		Celera
Cytogenetic Map	19	q13.33	NCBI
HuRef	19	46,905,404 - 46,928,112 (+)	NCBI		HuRef
CHM1_1	19	50,531,376 - 50,554,195 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	53,026,101 - 53,048,873 (+)	NCBI		T2T-CHM13v2.0

Zfp473
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	44,380,904 - 44,398,041 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	44,380,904 - 44,400,474 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	44,731,480 - 44,748,617 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	44,731,480 - 44,751,050 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	51,986,856 - 52,003,987 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	44,599,533 - 44,616,659 (-)	NCBI		MGSCv36	mm8
Celera	7	40,181,557 - 40,198,933 (-)	NCBI		Celera
Cytogenetic Map	7	B3	NCBI
cM Map	7	28.9	NCBI

Zfp473
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	104,358,757 - 104,379,833 (-)	NCBI		GRCr8
mRatBN7.2	1	95,222,683 - 95,243,328 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	95,223,433 - 95,243,325 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	1	100,736,319 - 100,755,498 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	100,736,243 - 100,746,021 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	101,800,924 - 101,820,140 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	95,211,692 - 95,221,283 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	95,266,640 - 95,299,394 (-)	NCBI
Celera	1	89,486,059 - 89,505,241 (-)	NCBI		Celera
Cytogenetic Map	1	q22	NCBI

Znf473
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955559	908,036 - 918,979 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955559	911,785 - 932,510 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF473
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	56,140,537 - 56,163,596 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	58,061,557 - 58,102,649 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	47,038,131 - 47,061,202 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	55,953,855 - 55,976,515 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	55,953,766 - 55,980,946 (+)	Ensembl	panpan1.1		panPan2

ZNF473
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	106,550,919 - 106,564,589 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	106,551,170 - 106,563,921 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	106,134,303 - 106,147,945 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	107,072,311 - 107,085,950 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	107,071,727 - 107,085,043 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	106,744,647 - 106,758,281 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	106,386,543 - 106,400,183 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	107,226,862 - 107,240,500 (-)	NCBI		UU_Cfam_GSD_1.0

ZNF473
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	55,009,719 - 55,023,141 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	55,009,252 - 55,023,142 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	50,791,758 - 50,804,308 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF473
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	43,166,310 - 43,185,447 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	43,165,871 - 43,187,219 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	23,144,824 - 23,165,141 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf473
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	4,296,664 - 4,313,707 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624832	4,296,755 - 4,320,988 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005341657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021721050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040278817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000042264 ⟹ ENSSTOP00000025761

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936889	41,119 - 57,582 (+)	Ensembl

RefSeq Acc Id:

XM_005341657 ⟹ XP_005341714

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	22,164,052 - 22,180,078 (+)	NCBI
SpeTri2.0	NW_004936889	40,189 - 56,052 (+)	NCBI

Sequence:

show sequence

CTGGGTTCCGGAAGTTCCCGTGAAGAGGCGCGTGTGAGAGGAGTTAGGTTTATTTCTCCTACCG
AGCTGGGGAAAGTCTGTTAGCCGGGCGGACTGCAATCTCGAGGTCTAAGAGTATATGAAATGGG
AACAGAACTGTGATTTGGAAATTATCTCAAAGTTGGATGTTGGTGAGAGTGCGGTAGTTAAGGG
AGAATCACTTCAGAAGTCCCGCCCACTTCTGAACATTTGGGGGCTCATCCAGCATGGACAGGGA
GTCAACTGTAGAAGGAAGGGAGAGTTTCTTACAGCTCCCTTCCTGTAGCTCTGCCAGCTGGGAA
CATGGAAGGGAAGGAGGAGGAGCTTGAAAGAGGTTACTGGGACATGGCGGCTATGGCTGAGGAA
TTTGTCACCCTCAAGGATGTGGCCATGGATTTCACCTTGGAGGATTGGGAGCAGCTGGGGCTAG
ACCAGGTGGACCTGTTCTGGGACACAGCTCTGGACAACTACCAGAACCTCTTTCTTCTGAATCC
CCCAAGACCCAGCCTGATCTCCTATCCAGATGGTGGGGAAGAGCTGGAGGACCTGGTAGAAGGA
AGCCCAGAAGCAGCTGGCCCTGATATGACTGAGACCAAGGCCTCTCCTCTGCATCAGGATTTCT
TAGAAGAAGGGCTCTCTCAGGAGATTTTGGAGGCATTTTCCAAAGATAGCCTCTGGAACTCCAG
TTTTGAAACCTGTATAGGTGAGAGCTGGTTAGATAGTTTTCTGGGAGATCCAGAAAGTCTTCTG
AGGACTGATGTTGCTATCAACGAGGAAAGTCCCACAGAATGCAATCATGAATTCAAGAGTGGCC
TCAGTCCTTGTTCCCTCCTTTCCACCGGAGAAGACTCTGTGATGCATGACGTTCCTGAAAAGAG
CCTCACACCAGCTAAATCAAAAGAATGTAGGAGTGACTTTGGCTACTACTCAGACCAGAGCCAG
CAGGATTCTGTACAGGGAGAGGAGACCCTGTATAAATGTAGTGAATGTGGGGAAAGCTTCAGCC
GGAGTTACCACCTTATCCAGCACTGGATCATTCACACAAAGGAGAAGCCCCCTGTGCGTCCAGA
GTATGAGAGAAGTTTCATCCAGAGTTCCTACCTATTTGTTCGTCCTGTGACTCATACAGGATAC
AAGTCCTATGTATGTAAGGAATGTGGGGAAACATTTAGTCAGAACATGCACCTCCAATGGCATC
AGAAAATTCACACTGGAGAAAAACTCTGTAACAATCAAGATCATGACTGTCCGTCCAATCGTGC
ACGACCCATTAAATATCAGAAAACCACCATAAGTGCTAAGTCCTACAAATGTAATGAATGTGGC
AAGGCTTTCAGCCAGGCCCTTCATCTTGCTGGGCACCAGAAGACCCACATTCAGAAACACTACG
AATGTGCTATGTGCCAAGCAGCCTTCAACTTGAAGAAGCATTTCATCCAGCATCAAAAGACCCA
TGCTACAAAAACTACCTCTGAGTGTCAGGAGTGTGGGAAGACCTTCAGGCGGAGTTCGTTACTC
ATTGAACACCAGGCCATCCACACTGGGGAGAAGCCTTATAAGTGCAATGAATGTGGGAAAGCCT
TCAGCCATACATCCTCACTGAAGATCCACCAGAGGGTTCACAGTGGAGAAAAGCCTTACAAATG
CAGTGACTGTGGGAAAACCTTCTGCCGGAACACTCACCTTAATGAACACCAGCGAATTCATACA
GGCTACAAACCCCACAAATGTCAGGAATGTGTCAAAAGTTTCAGCCGACCCTCACACCTGATTA
GACATCAGTCCAGTCATACCACAGAGAAGCTCTTTGGCTGCGCTGAATGCAAGGAGACCTTCAG
CCACAAAGAACACTTGGTGCAGCATCAGATAATCCACACCATCGAAGCCCCCTACCAATGTCAG
GAGTGTGGAGAACGCTTCATTTGCCATTCAACCCTGAATTGCCACCTGAGTACTCACACCAGAG
TAAAACAAGGATTTGATACAAGCAAGAAAATTTTGAATCTGAACTCAGAACAGAGAGAGTATCA
AAGGCTCAATGAGAAACGCTTTAAGTGTAACAAATGCGAGAAAACCTTTAACTGTAGCAAATAC
CTAACTCAGCATGAGAAGATTCACACCAGGGTAAAGTCTTTTGAGTGCCATCAGTGTGGGAAAG
CCTTTGGCCACAGTACACAACTCAGTCGCCATCAGAGAATCCACTCTGGGGTGAGGCCATGTGA
ACGTGGTGAGCACAGGAAAGCCGACCATAACCTCTCCCTCACTGAACAACAGTCTTCCCAAAGT
GAGCACTCCTTTAAGTGTAACGAATGTGGCAAGACCTTCAGCCAAAGTGCTCACCTCTCAGAAC
ATCAGTTAATTCACTCTGGAGAGAAGCCCTTTAAATGTAAGGAGTGTGACAAAGTCTTCACCCA
GAATAACTACCTTATTCAGCATCACAGGACTCATGCTGCAAAGAAGCACTTTCAGTGTAGTGAG
TGTGGGAAGACATTCCATCAGAGTTCATGCCTTTCTAAGCATCAGAGAATTCACACGGGGGAGA
AGCCCTATGAATGCAGCGACTGTGGGAAAGCCTTTGGCCTGAGTGCTCAACTCATCCGACACCA
GAGAGTTCACACCGGAGAAAAGCCTTATGTTTGTCAGGAATGTGGGAAATCCTTCAGCCAGAGC
TCATGCCTTTCCATCCACCGGAGAGTTCACACTGGAGAGAGACCATACATGTGTAGCAAATGTG
GGAAAACCTTTGCCCAGAGAGCAAATCTTACACAGCATGAAAGGATTCACACTGGGGAGAAGCC
TTACGCCTGTGGAATATGTGGCAAAGCCTTTGGCCTCAGTGCCCACCTAGCTCAGCATCAGAGA
ATTCACACCCAGGAGAAACCTTATCACTGTCAACACTGTCAAAAGACATTTCGGTGCTATTCCA
GTCTCAACCGACATCAGAGGCTTCACACTCAAAAGTAACAAGCAGCAATACTGTCCGCTGCCAC
TGGGTGGCAGCAGAGTCCTACACATCTGAACATGTTCATCTGCATACAAGATATGAAACCAACA
TATTGAGAGCTTCACCTCTCACAATAAATAAACCTCTTTATCAATAAAGATTGATTAGAAAGTT
TATACATATGGGTTTCATCCAAACAACGAGACACAAAAGTTGAGAAGCTGTGTAACATTGGAAT
TCAGAAGTAGATCTGGAGCCAGTCTGCTTGAGTTGTGTTCACCTCTGCCATCTACCACACCAAG
TGACCTTGGGAAAGTTAAAATCTCTCAGGGCCTCGATGTCCTCTTCCCTAAAATGGGCATAATA
ATCACCTACCTCAGGGAAGTTGTGAGGGTTAAATAAAGTCAAGTACTTAGAACTACTGACTGTG
AGTACATGTCAGATAAAACACAAATATGCTGTTTTATATTAAAAGAAGTTTTTGTTCA

hide sequence

RefSeq Acc Id:

XM_021721050 ⟹ XP_021576725

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	22,163,745 - 22,180,078 (+)	NCBI
SpeTri2.0	NW_004936889	39,812 - 56,052 (+)	NCBI

Sequence:

show sequence

AGCCAATCAAGATAAACTACGGGGCATCTCCCCACCAATCAAAGGTCTAAGAGTATATGAAATG
GGAACAGAACTGTGATTTGGAAATTATCTCAAAGTTGGATGTTGGTGAGAGTGCGGTAGTTAAG
GGAGAATCACTTCAGAAGTCCCGCCCACTTCTGAACATTTGGGGGCTCATCCAGCATGGACAGG
GAGTCAACTGTAGAAGGAAGGGAGAGTTTCTTACAGCTCCCTTCCTGTAGCTCTGCCAGCTGGG
AACATGGAAGGGAAGGAGGAGGAGCTTGAAAGAGGTTACTGGGACATGGCGGCTATGGCTGAGG
AATTTGTCACCCTCAAGGATGTGGCCATGGATTTCACCTTGGAGGATTGGGAGCAGCTGGGGCT
AGACCAGGTGGACCTGTTCTGGGACACAGCTCTGGACAACTACCAGAACCTCTTTCTTCTGAAT
CCCCCAAGACCCAGCCTGATCTCCTATCCAGATGGTGGGGAAGAGCTGGAGGACCTGGTAGAAG
GAAGCCCAGAAGCAGCTGGCCCTGATATGACTGAGACCAAGGCCTCTCCTCTGCATCAGGATTT
CTTAGAAGAAGGGCTCTCTCAGGAGATTTTGGAGGCATTTTCCAAAGATAGCCTCTGGAACTCC
AGTTTTGAAACCTGTATAGGTGAGAGCTGGTTAGATAGTTTTCTGGGAGATCCAGAAAGTCTTC
TGAGGACTGATGTTGCTATCAACGAGGAAAGTCCCACAGAATGCAATCATGAATTCAAGAGTGG
CCTCAGTCCTTGTTCCCTCCTTTCCACCGGAGAAGACTCTGTGATGCATGACGTTCCTGAAAAG
AGCCTCACACCAGCTAAATCAAAAGAATGTAGGAGTGACTTTGGCTACTACTCAGACCAGAGCC
AGCAGGATTCTGTACAGGGAGAGGAGACCCTGTATAAATGTAGTGAATGTGGGGAAAGCTTCAG
CCGGAGTTACCACCTTATCCAGCACTGGATCATTCACACAAAGGAGAAGCCCCCTGTGCGTCCA
GAGTATGAGAGAAGTTTCATCCAGAGTTCCTACCTATTTGTTCGTCCTGTGACTCATACAGGAT
ACAAGTCCTATGTATGTAAGGAATGTGGGGAAACATTTAGTCAGAACATGCACCTCCAATGGCA
TCAGAAAATTCACACTGGAGAAAAACTCTGTAACAATCAAGATCATGACTGTCCGTCCAATCGT
GCACGACCCATTAAATATCAGAAAACCACCATAAGTGCTAAGTCCTACAAATGTAATGAATGTG
GCAAGGCTTTCAGCCAGGCCCTTCATCTTGCTGGGCACCAGAAGACCCACATTCAGAAACACTA
CGAATGTGCTATGTGCCAAGCAGCCTTCAACTTGAAGAAGCATTTCATCCAGCATCAAAAGACC
CATGCTACAAAAACTACCTCTGAGTGTCAGGAGTGTGGGAAGACCTTCAGGCGGAGTTCGTTAC
TCATTGAACACCAGGCCATCCACACTGGGGAGAAGCCTTATAAGTGCAATGAATGTGGGAAAGC
CTTCAGCCATACATCCTCACTGAAGATCCACCAGAGGGTTCACAGTGGAGAAAAGCCTTACAAA
TGCAGTGACTGTGGGAAAACCTTCTGCCGGAACACTCACCTTAATGAACACCAGCGAATTCATA
CAGGCTACAAACCCCACAAATGTCAGGAATGTGTCAAAAGTTTCAGCCGACCCTCACACCTGAT
TAGACATCAGTCCAGTCATACCACAGAGAAGCTCTTTGGCTGCGCTGAATGCAAGGAGACCTTC
AGCCACAAAGAACACTTGGTGCAGCATCAGATAATCCACACCATCGAAGCCCCCTACCAATGTC
AGGAGTGTGGAGAACGCTTCATTTGCCATTCAACCCTGAATTGCCACCTGAGTACTCACACCAG
AGTAAAACAAGGATTTGATACAAGCAAGAAAATTTTGAATCTGAACTCAGAACAGAGAGAGTAT
CAAAGGCTCAATGAGAAACGCTTTAAGTGTAACAAATGCGAGAAAACCTTTAACTGTAGCAAAT
ACCTAACTCAGCATGAGAAGATTCACACCAGGGTAAAGTCTTTTGAGTGCCATCAGTGTGGGAA
AGCCTTTGGCCACAGTACACAACTCAGTCGCCATCAGAGAATCCACTCTGGGGTGAGGCCATGT
GAACGTGGTGAGCACAGGAAAGCCGACCATAACCTCTCCCTCACTGAACAACAGTCTTCCCAAA
GTGAGCACTCCTTTAAGTGTAACGAATGTGGCAAGACCTTCAGCCAAAGTGCTCACCTCTCAGA
ACATCAGTTAATTCACTCTGGAGAGAAGCCCTTTAAATGTAAGGAGTGTGACAAAGTCTTCACC
CAGAATAACTACCTTATTCAGCATCACAGGACTCATGCTGCAAAGAAGCACTTTCAGTGTAGTG
AGTGTGGGAAGACATTCCATCAGAGTTCATGCCTTTCTAAGCATCAGAGAATTCACACGGGGGA
GAAGCCCTATGAATGCAGCGACTGTGGGAAAGCCTTTGGCCTGAGTGCTCAACTCATCCGACAC
CAGAGAGTTCACACCGGAGAAAAGCCTTATGTTTGTCAGGAATGTGGGAAATCCTTCAGCCAGA
GCTCATGCCTTTCCATCCACCGGAGAGTTCACACTGGAGAGAGACCATACATGTGTAGCAAATG
TGGGAAAACCTTTGCCCAGAGAGCAAATCTTACACAGCATGAAAGGATTCACACTGGGGAGAAG
CCTTACGCCTGTGGAATATGTGGCAAAGCCTTTGGCCTCAGTGCCCACCTAGCTCAGCATCAGA
GAATTCACACCCAGGAGAAACCTTATCACTGTCAACACTGTCAAAAGACATTTCGGTGCTATTC
CAGTCTCAACCGACATCAGAGGCTTCACACTCAAAAGTAACAAGCAGCAATACTGTCCGCTGCC
ACTGGGTGGCAGCAGAGTCCTACACATCTGAACATGTTCATCTGCATACAAGATATGAAACCAA
CATATTGAGAGCTTCACCTCTCACAATAAATAAACCTCTTTATCAATAAAGATTGATTAGAAAG
TTTATACATATGGGTTTCATCCAAACAACGAGACACAAAAGTTGAGAAGCTGTGTAACATTGGA
ATTCAGAAGTAGATCTGGAGCCAGTCTGCTTGAGTTGTGTTCACCTCTGCCATCTACCACACCA
AGTGACCTTGGGAAAGTTAAAATCTCTCAGGGCCTCGATGTCCTCTTCCCTAAAATGGGCATAA
TAATCACCTACCTCAGGGAAGTTGTGAGGGTTAAATAAAGTCAAGTACTTAGAACTACTGACTG
TGAGTACATGTCAGATAAAACACAAATATGCTGTTTTATATTAAAAGAAGTTTTTGTTCA

hide sequence

RefSeq Acc Id:

XM_040278817 ⟹ XP_040134751

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	22,170,172 - 22,180,078 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005341714	(Get FASTA)	NCBI Sequence Viewer
	XP_021576725	(Get FASTA)	NCBI Sequence Viewer
	XP_040134751	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000025761.1

RefSeq Acc Id:	XP_005341714 ⟸ XM_005341657
- Peptide Label:	isoform X1
- UniProtKB:	A0A287CWV3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEGKEEELERGYWDMAAMAEEFVTLKDVAMDFTLEDWEQLGLDQVDLFWDTALDNYQNLFLLNP PRPSLISYPDGGEELEDLVEGSPEAAGPDMTETKASPLHQDFLEEGLSQEILEAFSKDSLWNSS FETCIGESWLDSFLGDPESLLRTDVAINEESPTECNHEFKSGLSPCSLLSTGEDSVMHDVPEKS LTPAKSKECRSDFGYYSDQSQQDSVQGEETLYKCSECGESFSRSYHLIQHWIIHTKEKPPVRPE YERSFIQSSYLFVRPVTHTGYKSYVCKECGETFSQNMHLQWHQKIHTGEKLCNNQDHDCPSNRA RPIKYQKTTISAKSYKCNECGKAFSQALHLAGHQKTHIQKHYECAMCQAAFNLKKHFIQHQKTH ATKTTSECQECGKTFRRSSLLIEHQAIHTGEKPYKCNECGKAFSHTSSLKIHQRVHSGEKPYKC SDCGKTFCRNTHLNEHQRIHTGYKPHKCQECVKSFSRPSHLIRHQSSHTTEKLFGCAECKETFS HKEHLVQHQIIHTIEAPYQCQECGERFICHSTLNCHLSTHTRVKQGFDTSKKILNLNSEQREYQ RLNEKRFKCNKCEKTFNCSKYLTQHEKIHTRVKSFECHQCGKAFGHSTQLSRHQRIHSGVRPCE RGEHRKADHNLSLTEQQSSQSEHSFKCNECGKTFSQSAHLSEHQLIHSGEKPFKCKECDKVFTQ NNYLIQHHRTHAAKKHFQCSECGKTFHQSSCLSKHQRIHTGEKPYECSDCGKAFGLSAQLIRHQ RVHTGEKPYVCQECGKSFSQSSCLSIHRRVHTGERPYMCSKCGKTFAQRANLTQHERIHTGEKP YACGICGKAFGLSAHLAQHQRIHTQEKPYHCQHCQKTFRCYSSLNRHQRLHTQK hide sequence

RefSeq Acc Id:	XP_021576725 ⟸ XM_021721050
- Peptide Label:	isoform X1
- UniProtKB:	A0A287CWV3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEGKEEELERGYWDMAAMAEEFVTLKDVAMDFTLEDWEQLGLDQVDLFWDTALDNYQNLFLLNP PRPSLISYPDGGEELEDLVEGSPEAAGPDMTETKASPLHQDFLEEGLSQEILEAFSKDSLWNSS FETCIGESWLDSFLGDPESLLRTDVAINEESPTECNHEFKSGLSPCSLLSTGEDSVMHDVPEKS LTPAKSKECRSDFGYYSDQSQQDSVQGEETLYKCSECGESFSRSYHLIQHWIIHTKEKPPVRPE YERSFIQSSYLFVRPVTHTGYKSYVCKECGETFSQNMHLQWHQKIHTGEKLCNNQDHDCPSNRA RPIKYQKTTISAKSYKCNECGKAFSQALHLAGHQKTHIQKHYECAMCQAAFNLKKHFIQHQKTH ATKTTSECQECGKTFRRSSLLIEHQAIHTGEKPYKCNECGKAFSHTSSLKIHQRVHSGEKPYKC SDCGKTFCRNTHLNEHQRIHTGYKPHKCQECVKSFSRPSHLIRHQSSHTTEKLFGCAECKETFS HKEHLVQHQIIHTIEAPYQCQECGERFICHSTLNCHLSTHTRVKQGFDTSKKILNLNSEQREYQ RLNEKRFKCNKCEKTFNCSKYLTQHEKIHTRVKSFECHQCGKAFGHSTQLSRHQRIHSGVRPCE RGEHRKADHNLSLTEQQSSQSEHSFKCNECGKTFSQSAHLSEHQLIHSGEKPFKCKECDKVFTQ NNYLIQHHRTHAAKKHFQCSECGKTFHQSSCLSKHQRIHTGEKPYECSDCGKAFGLSAQLIRHQ RVHTGEKPYVCQECGKSFSQSSCLSIHRRVHTGERPYMCSKCGKTFAQRANLTQHERIHTGEKP YACGICGKAFGLSAHLAQHQRIHTQEKPYHCQHCQKTFRCYSSLNRHQRLHTQK hide sequence

RefSeq Acc Id:	XP_040134751 ⟸ XM_040278817
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSSTOP00000025761 ⟸ ENSSTOT00000042264

Protein Domains

C2H2-type KRAB

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000029566	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000042264.1	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	KRAB	UniProtKB/TrEMBL
	KRAB_dom_sf	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	Znf473	ENTREZGENE
PANTHER	B-CELL CLL_LYMPHOMA 6 MEMBER B PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PROSITE	KRAB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	KRAB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF109640	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A287CWV3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar