B3gnt6 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6) - Rat Genome Database

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Gene: B3gnt6 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6) Ictidomys tridecemlineatus
Analyze
Symbol: B3gnt6
Name: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6
RGD ID: 12513042
Description: ENCODES a protein that exhibits galactosyltransferase activity (inferred); glycosyltransferase activity (inferred); hexosyltransferase activity (inferred); INVOLVED IN protein glycosylation (inferred); ASSOCIATED WITH Childhood Schizophrenia (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acetylgalactosaminyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase; UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494764,063,130 - 64,072,380 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364985,669,655 - 5,670,806 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364985,669,545 - 5,671,894 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
B3gnt6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494764,063,130 - 64,072,380 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364985,669,655 - 5,670,806 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364985,669,545 - 5,671,894 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GNT6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381177,034,398 - 77,041,973 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1177,034,398 - 77,041,973 (+)EnsemblGRCh38hg38GRCh38
GRCh371176,745,442 - 76,753,020 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361176,423,083 - 76,430,668 (+)NCBINCBI36Build 36hg18NCBI36
Celera1174,052,931 - 74,060,511 (+)NCBICelera
Cytogenetic Map11q13.5NCBI
HuRef1173,043,201 - 73,050,745 (+)NCBIHuRef
CHM1_11176,628,612 - 76,636,108 (+)NCBICHM1_1
T2T-CHM13v2.01176,964,751 - 76,972,335 (+)NCBIT2T-CHM13v2.0
B3gnt6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39797,841,622 - 97,848,682 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl797,841,624 - 97,848,688 (-)EnsemblGRCm39 Ensembl
GRCm38798,192,415 - 98,199,475 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl798,192,417 - 98,199,481 (-)EnsemblGRCm38mm10GRCm38
MGSCv377105,340,925 - 105,347,985 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36798,067,607 - 98,074,667 (-)NCBIMGSCv36mm8
Celera798,513,637 - 98,520,717 (-)NCBICelera
Cytogenetic Map7E1NCBI
cM Map753.63NCBI
B3gnt6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81161,897,504 - 161,915,046 (-)NCBIGRCr8
mRatBN7.21152,484,572 - 152,496,226 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1152,486,343 - 152,492,150 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1160,474,317 - 160,479,416 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01167,654,495 - 167,659,594 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01160,528,014 - 160,533,113 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01163,143,027 - 163,149,496 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1163,143,917 - 163,148,948 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01169,349,783 - 169,356,300 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41155,435,459 - 155,440,490 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11155,514,262 - 155,515,423 (-)NCBI
Celera1150,577,916 - 150,582,937 (-)NCBICelera
Cytogenetic Map1q32NCBI
B3gnt6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541414,728,660 - 14,729,805 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541414,728,067 - 14,729,896 (-)NCBIChiLan1.0ChiLan1.0
B3GNT6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2977,958,118 - 77,967,498 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11179,006,295 - 79,015,676 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01172,089,341 - 72,094,694 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11175,728,989 - 75,736,443 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1175,734,036 - 75,735,190 (+)Ensemblpanpan1.1panPan2
B3GNT6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12121,693,069 - 21,694,140 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2121,692,944 - 21,694,425 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2121,520,489 - 21,528,427 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02121,890,713 - 21,898,440 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2121,892,648 - 21,893,772 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12121,666,137 - 21,673,869 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02121,884,350 - 21,892,294 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02121,806,101 - 21,814,044 (-)NCBIUU_Cfam_GSD_1.0
B3GNT6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl911,176,045 - 11,178,111 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1911,169,008 - 11,179,228 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2912,269,844 - 12,273,519 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B3GNT6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1168,247,073 - 68,249,569 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl168,247,162 - 68,248,316 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604357,525,608 - 57,529,943 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B3gnt6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624863116,297 - 121,796 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005323226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000027412   ⟹   ENSSTOP00000015891
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364985,669,655 - 5,670,806 (+)Ensembl
RefSeq Acc Id: XM_005323226   ⟹   XP_005323283
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494764,063,130 - 64,072,380 (+)NCBI
SpeTri2.0NW_0049364985,669,545 - 5,671,894 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005323283 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000015891.1
GenBank Protein KAG3286195 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005323283   ⟸   XM_005323226
- UniProtKB: I3MUU6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000015891   ⟸   ENSSTOT00000027412


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027714 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000027412.2 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.50 UniProtKB/TrEMBL
InterPro Glyco_trans_31 UniProtKB/TrEMBL
NCBI Gene B3gnt6 ENTREZGENE
PANTHER ACETYLGALACTOSAMINYL-O-GLYCOSYL-GLYCOPROTEIN BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE UniProtKB/TrEMBL
  PTHR11214 UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/TrEMBL
UniProt I3MUU6 ENTREZGENE, UniProtKB/TrEMBL