Ddn (dendrin) - Rat Genome Database

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Gene: Ddn (dendrin) Ictidomys tridecemlineatus
Analyze
Symbol: Ddn
Name: dendrin
RGD ID: 12511133
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494566,363,929 - 66,368,023 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365126,796,797 - 6,800,886 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365126,796,807 - 6,800,886 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ddn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494566,363,929 - 66,368,023 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365126,796,797 - 6,800,886 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365126,796,807 - 6,800,886 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DDN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381248,995,149 - 48,999,375 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1248,995,149 - 48,999,375 (-)EnsemblGRCh38hg38GRCh38
GRCh371249,388,932 - 49,393,158 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361247,675,200 - 47,679,355 (-)NCBINCBI36Build 36hg18NCBI36
Build 341247,675,199 - 47,679,239NCBI
Celera1248,183,719 - 48,187,874 (-)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1246,420,448 - 46,424,603 (-)NCBIHuRef
CHM1_11249,354,713 - 49,358,868 (-)NCBICHM1_1
T2T-CHM13v2.01248,957,324 - 48,961,550 (-)NCBIT2T-CHM13v2.0
Ddn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391598,701,663 - 98,705,806 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1598,701,658 - 98,707,371 (-)EnsemblGRCm39 Ensembl
GRCm381598,803,782 - 98,807,925 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1598,803,777 - 98,809,490 (-)EnsemblGRCm38mm10GRCm38
MGSCv371598,634,213 - 98,638,356 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361598,631,811 - 98,635,959 (-)NCBIMGSCv36mm8
Celera15100,953,224 - 100,957,368 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1554.69NCBI
Ddn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87131,832,270 - 131,836,252 (-)NCBIGRCr8
mRatBN7.27129,953,317 - 129,957,299 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7129,953,318 - 129,957,341 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7131,760,360 - 131,764,341 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07133,985,918 - 133,989,899 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07133,898,425 - 133,902,406 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07140,479,707 - 140,486,093 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7140,479,711 - 140,483,693 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X114,989,830 - 114,993,812 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47137,572,548 - 137,576,530 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17137,648,985 - 137,652,967 (-)NCBI
Celera7126,441,909 - 126,445,891 (-)NCBICelera
Cytogenetic Map7q36NCBI
Ddn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555007,828,759 - 7,833,397 (-)NCBIChiLan1.0ChiLan1.0
DDN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21045,185,792 - 45,190,022 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11245,182,553 - 45,186,783 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01239,751,507 - 39,755,731 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11240,631,223 - 40,635,377 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1240,631,238 - 40,633,787 (+)Ensemblpanpan1.1panPan2
DDN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1275,570,788 - 5,577,836 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl275,573,698 - 5,577,017 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2740,679,868 - 40,685,770 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0275,622,912 - 5,628,814 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl275,624,676 - 5,627,202 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1275,586,854 - 5,592,756 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0275,577,048 - 5,582,950 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02741,072,200 - 41,078,102 (-)NCBIUU_Cfam_GSD_1.0
DDN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl515,026,080 - 15,029,632 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1515,025,508 - 15,032,335 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2515,436,163 - 15,439,960 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DDN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11145,236,826 - 45,239,540 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1145,236,969 - 45,239,519 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037200,904,312 - 200,908,548 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ddn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248163,188,702 - 3,191,309 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248163,188,765 - 3,192,905 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005324900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000022306   ⟹   ENSSTOP00000018860
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365126,796,797 - 6,800,886 (-)Ensembl
RefSeq Acc Id: XM_005324900   ⟹   XP_005324957
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494566,363,929 - 66,368,023 (+)NCBI
SpeTri2.0NW_0049365126,796,807 - 6,800,886 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005324957 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018860.1
GenBank Protein KAG3292053 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005324957   ⟸   XM_005324900
- UniProtKB: I3N3B4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000018860   ⟸   ENSSTOT00000022306


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028408 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000022306.2 UniProtKB/TrEMBL
InterPro Dendrin UniProtKB/TrEMBL
NCBI Gene Ddn ENTREZGENE
PANTHER DENDRIN UniProtKB/TrEMBL
  PTHR16757 UniProtKB/TrEMBL
Pfam Dendrin UniProtKB/TrEMBL
UniProt I3N3B4 ENTREZGENE, UniProtKB/TrEMBL