Tmem242 (transmembrane protein 242)

Gene: Tmem242 (transmembrane protein 242) Ictidomys tridecemlineatus

Analyze

Symbol:

Tmem242

Name:

transmembrane protein 242

RGD ID:

12510887

Description:

INVOLVED IN mitochondrial proton-transporting ATP synthase complex assembly (inferred); ASSOCIATED WITH blepharophimosis (ortholog); chromosome 6q24-q25 deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred); mitochondrial inner membrane (inferred); mitochondrion (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	142,022,779 - 142,051,166 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936489	9,273,559 - 9,303,013 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936489	9,274,772 - 9,303,095 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

blepharophimosis (ISO)

chromosome 6q24-q25 deletion syndrome (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrial proton-transporting ATP synthase complex assembly (IEA)

Cellular Component

membrane (IEA)

mitochondrial inner membrane (IEA)

mitochondrion (IEA)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

Tmem242
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	142,022,779 - 142,051,166 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936489	9,273,559 - 9,303,013 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936489	9,274,772 - 9,303,095 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM242
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	157,289,025 - 157,323,519 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	157,289,025 - 157,323,601 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	157,710,057 - 157,744,551 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	157,632,661 - 157,665,497 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	6	158,349,337 - 158,384,390 (-)	NCBI		Celera
Cytogenetic Map	6	q25.3	NCBI
HuRef	6	155,141,523 - 155,208,969 (-)	NCBI		HuRef
CHM1_1	6	157,971,859 - 158,007,905 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	158,494,801 - 158,565,506 (-)	NCBI		T2T-CHM13v2.0

Tmem242
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	5,461,139 - 5,490,535 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	5,461,145 - 5,490,534 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	5,410,864 - 5,440,260 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	5,410,870 - 5,440,259 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	5,410,864 - 5,440,260 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	5,367,352 - 5,396,725 (-)	NCBI		MGSCv36	mm8
Celera	17	5,953,307 - 5,982,703 (-)	NCBI		Celera
Cytogenetic Map	17	A1	NCBI
cM Map	17	3.16	NCBI

Tmem242
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	48,397,865 - 48,424,639 (-)	NCBI		GRCr8
mRatBN7.2	1	45,992,713 - 46,019,684 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	45,992,713 - 46,019,626 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	46,544,925 - 46,571,693 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	52,532,179 - 52,558,947 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	46,620,351 - 46,647,119 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	46,302,546 - 46,329,885 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	46,302,970 - 46,329,682 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	47,617,583 - 47,645,003 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	1	41,686,849 - 41,713,616 (-)	NCBI		Celera
Cytogenetic Map	1	q11	NCBI

Tmem242
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955439	4,935,813 - 4,967,382 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955439	4,936,386 - 4,964,934 (+)	NCBI	ChiLan1.0	ChiLan1.0

TMEM242
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	177,311,879 - 177,429,245 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	175,199,795 - 175,333,040 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	155,101,644 - 155,208,800 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	157,273,530 - 157,279,349 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	157,273,524 - 157,279,329 (-)	Ensembl	panpan1.1		panPan2

TMEM242
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	46,870,428 - 46,901,079 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	46,872,312 - 46,901,322 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	47,715,445 - 47,746,239 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	47,057,765 - 47,088,430 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	1	46,936,581 - 46,967,352 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	46,799,492 - 46,830,130 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	47,357,942 - 47,388,583 (-)	NCBI		UU_Cfam_GSD_1.0

TMEM242
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	9,667,291 - 9,723,347 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	9,667,865 - 9,718,226 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	11,703,721 - 11,755,297 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMEM242
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	84,894,462 - 84,920,439 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	84,894,882 - 84,920,806 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	57,250,944 - 57,284,720 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem242
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624785	840,632 - 874,305 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624785	840,425 - 874,306 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005321394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000026946 ⟹ ENSSTOP00000022851

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936489	9,273,559 - 9,303,013 (-)	Ensembl

RefSeq Acc Id:

XM_005321394 ⟹ XP_005321451

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	142,022,779 - 142,051,166 (-)	NCBI
SpeTri2.0	NW_004936489	9,274,772 - 9,303,095 (-)	NCBI

Sequence:

show sequence

GCAGCGGAACCTTTCTCCTCCGCCCTGCTCTAGATTCCACCCGGGCCCGGTTGGCGCCGTACGC
AGTGGTGGAGACTTAGACATGGGGACGGCGGGCGCCGGGCCTGGCGAGCCTTCTCACCTGGAGA
CTCCGGCGCCCACGGACGATCGGCTTTTCCTGGTGAAAGGTGGAATTTTCCTTGGTTCTGTTGC
CGCAGCAGGAATGTTGGCTGGATTTGTTACCACACTATCATTGGCTAAAAAGAAAAGCCCTGAA
TGGTTCAATAAGGGAAGCATGGCTACAGCTGCCTTACCAGAGAGCGGGTCTTCCCTTGCCTTGA
GAGCTCTTGGCTGGGGCTCACTTTATGCCTGGTGTGGGGTTGGTGTGATCAGCTTCGCAGTCTG
GAAAGCTTTAGGAGTTCACAGTATGAAAGACTTTCGAAGTAAAATGCAATCGATATTTCCAACA
ATTCCCAAGAACTCCACGTCAGCTGTTGAGTGGGAGGAAGCACTGAAATCTAAATAGAAGGACA
TGGGTGAATTCCAGTATGATTGCTGCAGGAAGGGTGGTTTTGGAAACACCACCACAGTTGAAAA
GGGCCTGGGAGCAGTTTCCCCATGGATCACCAACAGATTGTGATGAAGCGCAGGACGCAGTGTC
GAGGCTCCCCGGCAGGCGCTCTTTCTGTGTGCCTGAGTCTGTCGGGAGGGAAATGTCTTCCCAA
AGTTCAGATGACTATTTAACAATAATAATCACTGGGATGCCTTCCCAGGGAAGATGTCTGTTTG
GAACAATAAACCAAGGGTTGTACCCGGGAAAAAAGAGTTTATAATAAAGTATGACAAAGAATCT
TTATAAGCAGACCTCTAACAGCAGTGATACCTCAATGTATCTAAATAAGTGGGTTTTATGAGCC
ATTCCTGTCCGTATATGCCTGAGACTCTGGATGGTGGATATGAGGCAGTGTAAAGTGACAGGCT
CATAGGTGACTCCCACATAGTGGGAGGCAGTCGTGTGGCTTGTGGTACTGAAAGTCGTCTTTGG
TTTGCAGCTAGGACACATTCCAGTTGCTCACCTGACGGCCTCACTGGAAGGCCCTGTGAACCAT
TATGGGTAGGACAAAAAGCCAACAGCAGATTACGATAAATGACACAGCTGGGCTAAAATAACAA
TAATGGGTGTAAGATGTACTTTCTTGAAAAATTAGTTCTGGGTCCTGAATACTGACAATCTATA
GTTTTGTCTCAAAGTAAACCTATCTTGAATATTTTTAACAGAGTCATCTGAGTCTCAGAAATTG
GTAACTGTTCCTTAATGAAGCTAATTCTTACCTACATACATAACCCTCTCATGTCCTCCACGAT
CTCACAGAAAACAGATGGAAAATAATGTCTACGTGCAATTATTTTTACTGGAAATTAAAATTCT
TTAAAGAAGAGAAAATAATGTGTCAGTGTGTCCAGAGAAATCGCCCCTGGTCGAACATCACTTG
TGCAGTTTCCTTAGAATCACTTAGGCTCTAATTAGTCAGCAATCAGGTTTAATAAAGCACATTT
GAAATTTC

hide sequence

Protein Sequences


Protein RefSeqs	XP_005321451	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000022851.1
GenBank Protein	KAG3290494	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005321451 ⟸ XM_005321394
- UniProtKB:	I3NEQ4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGTAGAGPGEPSHLETPAPTDDRLFLVKGGIFLGSVAAAGMLAGFVTTLSLAKKKSPEWFNKGS MATAALPESGSSLALRALGWGSLYAWCGVGVISFAVWKALGVHSMKDFRSKMQSIFPTIPKNST SAVEWEEALKSK hide sequence

RefSeq Acc Id:

ENSSTOP00000022851 ⟸ ENSSTOT00000026946

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000021519	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000026946.2	UniProtKB/TrEMBL
InterPro	TMEM242	UniProtKB/TrEMBL
NCBI Gene	Tmem242	ENTREZGENE
PANTHER	PTHR13141	UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 242	UniProtKB/TrEMBL
Pfam	DUF1358	UniProtKB/TrEMBL
UniProt	I3NEQ4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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