LOC101976436 (uncharacterized LOC101976436) - Rat Genome Database

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Gene: LOC101976436 (uncharacterized LOC101976436) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101976436
Name: uncharacterized LOC101976436
RGD ID: 12510169
Description: ENCODES a protein that exhibits DNA binding (inferred); mRNA 3'-UTR binding (inferred); nucleic acid binding (inferred); INVOLVED IN apoptotic process (inferred); ectopic germ cell programmed cell death (inferred); fertilization (inferred); FOUND IN cytoplasm (inferred); nucleus (inferred); synapse (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein LOC101976436; Y-box-binding protein 3; Ybx3
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494596,725,048 - 96,747,694 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493715823,784 - 46,354 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_040281856   ⟹   XP_040137790
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494596,725,048 - 96,747,694 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040137790 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000001876.3
GenBank Protein KAG3292397 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040137790   ⟸   XM_040281856
Protein Domains
CSD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002108 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002106.3 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.140 UniProtKB/TrEMBL
InterPro Cold_shock_domain UniProtKB/TrEMBL
  CSD UniProtKB/TrEMBL
  CSD_1 UniProtKB/TrEMBL
  CSP_DNA-bd UniProtKB/TrEMBL
  NA-bd_OB-fold UniProtKB/TrEMBL
NCBI Gene LOC101976436 ENTREZGENE
PANTHER COLD SHOCK DOMAIN CONTAINING PROTEINS UniProtKB/TrEMBL
Pfam CSD UniProtKB/TrEMBL
PRINTS COLDSHOCK UniProtKB/TrEMBL
PROSITE CSD_1 UniProtKB/TrEMBL
  CSD_2 UniProtKB/TrEMBL
SMART CSP UniProtKB/TrEMBL
Superfamily-SCOP SSF50249 UniProtKB/TrEMBL
UniProt I3LZS6_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101976436  uncharacterized LOC101976436  LOC101976436  Y-box-binding protein 3  Symbol and/or name change 5135510 APPROVED