Dynlt1 (dynein light chain Tctex-type 1) - Rat Genome Database

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Gene: Dynlt1 (dynein light chain Tctex-type 1) Ictidomys tridecemlineatus
Analyze
Symbol: Dynlt1
Name: dynein light chain Tctex-type 1
RGD ID: 12509737
Description: ENCODES a protein that exhibits G-protein beta-subunit binding (ortholog); GTP-dependent protein binding (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN axon development (ortholog); cardiac muscle cell apoptotic process (ortholog); dendrite development (ortholog); PARTICIPATES IN mitochondria transport pathway; ASSOCIATED WITH 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome (ortholog); chromosome 6q24-q25 deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN axonal growth cone (ortholog); dynein complex (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946143,077,230 - 143,083,807 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648910,329,223 - 10,335,782 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648910,329,223 - 10,335,758 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Dynlt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946143,077,230 - 143,083,807 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648910,329,223 - 10,335,782 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648910,329,223 - 10,335,758 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DYNLT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386158,636,474 - 158,644,743 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6158,636,474 - 158,644,743 (-)EnsemblGRCh38hg38GRCh38
GRCh376159,057,506 - 159,065,775 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366158,977,497 - 158,985,728 (-)NCBINCBI36Build 36hg18NCBI36
Build 346159,027,914 - 159,036,149NCBI
Celera6159,705,500 - 159,713,799 (-)NCBICelera
Cytogenetic Map6q25.3NCBI
HuRef6156,528,404 - 156,536,700 (-)NCBIHuRef
CHM1_16159,320,069 - 159,328,365 (-)NCBICHM1_1
T2T-CHM13v2.06159,881,698 - 159,889,969 (-)NCBIT2T-CHM13v2.0
Dynlt1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39176,697,511 - 6,703,695 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl176,697,511 - 6,703,695 (+)EnsemblGRCm39 Ensembl
GRCm38176,429,530 - 6,440,500 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl176,306,340 - 6,317,500 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl176,430,112 - 6,436,296 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl176,646,602 - 6,655,900 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl176,601,671 - 6,609,774 (+)EnsemblGRCm38mm10GRCm38
MGSCv37176,429,260 - 6,435,444 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36176,412,303 - 6,418,495 (-)NCBIMGSCv36mm8
Cytogenetic Map17A1NCBI
cM Map173.97NCBI
Dynlt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8149,292,093 - 49,299,051 (-)NCBIGRCr8
mRatBN7.2146,887,017 - 46,893,956 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl146,887,017 - 46,893,881 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx147,435,976 - 47,442,799 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0153,423,238 - 53,430,061 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0147,511,411 - 47,518,234 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0147,206,892 - 47,213,785 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl147,206,895 - 47,213,749 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0148,510,103 - 48,516,996 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4141,097,174 - 41,103,997 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1141,100,118 - 41,106,942 (-)NCBI
Celera142,574,662 - 42,581,485 (-)NCBICelera
Cytogenetic Map1q11NCBI
Dynlt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554393,833,525 - 3,842,393 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554393,833,525 - 3,842,393 (+)NCBIChiLan1.0ChiLan1.0
DYNLT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25178,744,093 - 178,752,350 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16176,647,991 - 176,656,267 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06156,530,068 - 156,538,346 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16161,544,128 - 161,552,391 (-)NCBIpanpan1.1PanPan1.1panPan2
DYNLT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1148,058,804 - 48,066,389 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl148,058,804 - 48,066,609 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha148,903,907 - 48,911,551 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0148,244,957 - 48,252,653 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl148,244,957 - 48,253,247 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1148,121,663 - 48,129,302 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0147,992,244 - 47,999,994 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0148,551,864 - 48,559,503 (-)NCBIUU_Cfam_GSD_1.0
DYNLT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl18,556,059 - 8,563,676 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.118,556,083 - 8,562,865 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2110,385,073 - 10,391,588 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DYNLT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11386,210,462 - 86,218,002 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1386,210,465 - 86,217,956 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604058,592,316 - 58,599,872 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dynlt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624929968,823 - 976,414 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624929969,294 - 976,420 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005321407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000006261   ⟹   ENSSTOP00000005598
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648910,329,223 - 10,335,782 (-)Ensembl
RefSeq Acc Id: XM_005321407   ⟹   XP_005321464
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946143,077,230 - 143,083,807 (-)NCBI
SpeTri2.0NW_00493648910,329,223 - 10,335,758 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005321464 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000005598.2
GenBank Protein KAG3290511 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005321464   ⟸   XM_005321407
- UniProtKB: I3M7J8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000005598   ⟸   ENSSTOT00000006261


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006273 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006261.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1140.40 UniProtKB/TrEMBL
InterPro Tctex-1-like UniProtKB/TrEMBL
  Tctex-1-like_sf UniProtKB/TrEMBL
NCBI Gene Dynlt1 ENTREZGENE
PANTHER DYNEIN LIGHT CHAIN TCTEX-TYPE 1 UniProtKB/TrEMBL
  PTHR21255 UniProtKB/TrEMBL
Pfam Tctex-1 UniProtKB/TrEMBL
UniProt I3M7J8 ENTREZGENE, UniProtKB/TrEMBL