Wdr1 (WD repeat domain 1) - Rat Genome Database

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Gene: Wdr1 (WD repeat domain 1) Ictidomys tridecemlineatus
Analyze
Symbol: Wdr1
Name: WD repeat domain 1
RGD ID: 12507750
Description: ENCODES a protein that exhibits actin binding (inferred); actin filament binding (inferred); INVOLVED IN actin cytoskeleton organization (ortholog); positive regulation of actin filament depolymerization (ortholog); regulation of oligodendrocyte differentiation (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); Autosomal Dominant Intellectual Developmental Disorder 61 (ortholog); genetic disease (ortholog); FOUND IN actin cytoskeleton (ortholog); glutamatergic synapse (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WD repeat-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528562,941,450 - 62,980,758 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647716,629,856 - 16,682,450 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647716,643,142 - 16,682,450 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Wdr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528562,941,450 - 62,980,758 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647716,629,856 - 16,682,450 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647716,643,142 - 16,682,450 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38410,074,339 - 10,116,799 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl410,068,089 - 10,116,972 (-)EnsemblGRCh38hg38GRCh38
GRCh37410,075,963 - 10,118,423 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3649,685,061 - 9,727,671 (-)NCBINCBI36Build 36hg18NCBI36
Build 3449,752,232 - 9,794,842NCBI
Celera410,558,329 - 10,600,940 (-)NCBICelera
Cytogenetic Map4p16.1NCBI
HuRef49,409,667 - 9,452,321 (-)NCBIHuRef
CHM1_1410,074,119 - 10,116,732 (-)NCBICHM1_1
T2T-CHM13v2.0410,073,924 - 10,116,377 (-)NCBIT2T-CHM13v2.0
Wdr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39538,684,149 - 38,720,265 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl538,684,156 - 38,720,564 (-)EnsemblGRCm39 Ensembl
GRCm38538,526,806 - 38,562,922 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl538,526,813 - 38,563,221 (-)EnsemblGRCm38mm10GRCm38
MGSCv37538,918,052 - 38,952,834 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36538,815,062 - 38,849,844 (-)NCBIMGSCv36mm8
Celera535,975,532 - 36,010,314 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map520.63NCBI
Wdr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81476,470,238 - 76,504,086 (+)NCBIGRCr8
mRatBN7.21472,258,032 - 72,291,768 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1472,257,956 - 72,291,766 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1476,699,706 - 76,733,442 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01477,940,571 - 77,974,307 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01474,380,625 - 74,414,361 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01476,990,014 - 77,023,739 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1476,989,919 - 77,023,726 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01476,974,171 - 77,007,900 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41477,489,828 - 77,524,430 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11477,522,469 - 77,526,067 (+)NCBI
Celera1471,210,337 - 71,244,077 (+)NCBICelera
Cytogenetic Map14q21NCBI
Wdr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555492,640,195 - 2,673,969 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555492,640,193 - 2,674,818 (+)NCBIChiLan1.0ChiLan1.0
WDR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2310,324,424 - 10,367,102 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1410,533,303 - 10,575,814 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v044,487,054 - 4,516,732 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.149,805,164 - 9,848,032 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl49,805,164 - 9,848,032 (-)Ensemblpanpan1.1panPan2
WDR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1369,305,731 - 69,348,183 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl369,305,731 - 69,348,177 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha371,858,411 - 71,900,857 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0370,061,466 - 70,103,927 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl370,061,281 - 70,104,689 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1369,335,607 - 69,378,040 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0369,500,585 - 69,543,019 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0369,883,812 - 69,926,328 (+)NCBIUU_Cfam_GSD_1.0
WDR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl86,413,347 - 6,452,346 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.186,413,338 - 6,452,383 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
WDR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12739,929,749 - 39,973,892 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2739,929,787 - 39,974,012 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604786,717,645 - 86,762,071 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475521,090,717 - 21,123,259 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475521,090,599 - 21,124,107 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021722207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000004388   ⟹   ENSSTOP00000003937
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647716,629,856 - 16,682,450 (+)Ensembl
RefSeq Acc Id: XM_021722207   ⟹   XP_021577882
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528562,941,450 - 62,980,758 (+)NCBI
SpeTri2.0NW_00493647716,643,142 - 16,682,450 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021577882 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003937.3
RefSeq Acc Id: XP_021577882   ⟸   XM_021722207
- UniProtKB: I3M453 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000003937   ⟸   ENSSTOT00000004388


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004366 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004388.3 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  N2O_reductase_N UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
NCBI Gene Wdr1 ENTREZGENE
PANTHER WD REPEAT-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  WD-REPEATCONTAINING PROTEIN WDR1 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50974 UniProtKB/TrEMBL
  TolB, C-terminal domain UniProtKB/TrEMBL
UniProt I3M453 ENTREZGENE, UniProtKB/TrEMBL