Ctr9 (CTR9 homolog, Paf1/RNA polymerase II complex component) - Rat Genome Database

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Gene: Ctr9 (CTR9 homolog, Paf1/RNA polymerase II complex component) Ictidomys tridecemlineatus
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Symbol: Ctr9
Name: CTR9 homolog, Paf1/RNA polymerase II complex component
RGD ID: 12507558
Description: ENCODES a protein that exhibits SH2 domain binding (ortholog); INVOLVED IN blastocyst growth (ortholog); blastocyst hatching (ortholog); cellular response to lipopolysaccharide (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription elongation pathway; FOUND IN Cdc73/Paf1 complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: CTR9, Paf1/RNA polymerase II complex component; RNA polymerase-associated protein CTR9 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494751,551,954 - 51,579,000 (-)NCBI
SpeTri2.0NW_0049365287,585,937 - 7,613,022 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Ctr9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494751,551,954 - 51,579,000 (-)NCBI
SpeTri2.0NW_0049365287,585,937 - 7,613,022 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTR9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1110,751,246 - 10,801,625 (+)EnsemblGRCh38hg38GRCh38
GRCh381110,751,246 - 10,779,746 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371110,772,793 - 10,801,293 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361110,729,387 - 10,757,866 (+)NCBINCBI36hg18NCBI36
Build 341110,729,386 - 10,757,870NCBI
Celera1110,894,387 - 10,922,894 (+)NCBI
Cytogenetic Map11p15.4NCBI
HuRef1110,445,613 - 10,474,231 (+)NCBIHuRef
CHM1_11110,771,457 - 10,800,221 (+)NCBICHM1_1
Ctr9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397110,628,158 - 110,655,584 (+)NCBIGRCm39mm39
GRCm39 Ensembl7110,628,158 - 110,655,584 (+)Ensembl
GRCm387111,028,951 - 111,056,377 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7111,028,951 - 111,056,377 (+)EnsemblGRCm38mm10GRCm38
MGSCv377118,172,465 - 118,199,891 (+)NCBIGRCm37mm9NCBIm37
MGSCv367110,820,202 - 110,847,517 (+)NCBImm8
Celera7111,006,421 - 111,033,848 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.98NCBI
Ctr9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21165,137,277 - 165,167,303 (+)NCBI
Rnor_6.0 Ensembl1175,839,108 - 175,869,165 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01175,839,140 - 175,869,167 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01182,823,942 - 182,853,969 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41168,784,355 - 168,814,971 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11168,894,827 - 168,925,627 (+)NCBI
Celera1163,025,762 - 163,055,778 (+)NCBICelera
Cytogenetic Map1q33NCBI
Ctr9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541426,347,508 - 26,373,785 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541426,347,508 - 26,373,726 (+)NCBIChiLan1.0ChiLan1.0
CTR9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11110,610,892 - 10,639,808 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1110,610,892 - 10,639,808 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01110,884,353 - 10,913,246 (+)NCBIMhudiblu_PPA_v0panPan3
CTR9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12133,915,804 - 33,949,597 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2133,915,772 - 33,949,103 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2133,480,521 - 33,514,331 (+)NCBI
ROS_Cfam_1.02134,792,714 - 34,826,492 (+)NCBI
UMICH_Zoey_3.12134,052,853 - 34,086,742 (+)NCBI
UNSW_CanFamBas_1.02134,224,190 - 34,258,155 (+)NCBI
UU_Cfam_GSD_1.02134,516,004 - 34,549,782 (+)NCBI
CTR9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl248,697,972 - 48,729,307 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1248,700,629 - 48,729,480 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2252,047,110 - 52,075,971 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CTR9
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1154,047,922 - 54,077,049 (-)NCBI
ChlSab1.1 Ensembl154,047,886 - 54,077,338 (-)Ensembl
Ctr9
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247662,823,561 - 2,851,742 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005326800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005326800   ⟹   XP_005326857
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494751,551,954 - 51,579,000 (-)NCBI
SpeTri2.0NW_0049365287,585,937 - 7,613,022 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005326857 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005326857   ⟸   XM_005326800
- UniProtKB: I3MLB4 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
TPR_REGION


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013594 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000012186 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOP00000024212 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013600 UniProtKB/TrEMBL
  ENSSTOT00000033729 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro Ctr9 UniProtKB/TrEMBL
  TPR-contain_dom UniProtKB/TrEMBL
  TPR-like_helical_dom UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
NCBI Gene Ctr9 ENTREZGENE
PANTHER PTHR14027 UniProtKB/TrEMBL
Pfam TPR_8 UniProtKB/TrEMBL
PROSITE TPR UniProtKB/TrEMBL
  TPR_REGION UniProtKB/TrEMBL
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A287CSF9_ICTTR UniProtKB/TrEMBL
  I3MLB4 ENTREZGENE, UniProtKB/TrEMBL