LOC101978551 (olfactory receptor 10J1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC101978551 (olfactory receptor 10J1) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101978551 (Ensembl: OR10J4)
Name: olfactory receptor 10J1 (Ensembl:olfactory receptor family 10 subfamily J member 4 (gene/pseudogene))
RGD ID: 12506844
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC101970512; olfactory receptor 10J4; OR10J1; OR10J4
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050585,618,585 - 5,627,490 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367401,134,990 - 1,135,925 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049367401,127,020 - 1,127,970 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367401,127,020 - 1,135,925 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005339416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000004560   ⟹   ENSSTOP00000004091
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367401,127,020 - 1,127,970 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000021547   ⟹   ENSSTOP00000019954
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367401,134,990 - 1,135,925 (-)Ensembl
RefSeq Acc Id: XM_005339416   ⟹   XP_005339473
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050585,618,585 - 5,627,490 (+)NCBI
SpeTri2.0NW_0049367401,127,020 - 1,135,925 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005339473 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000004091.2
  ENSSTOP00000019954.1
GenBank Protein KAG3281025 (Get FASTA)   NCBI Sequence Viewer  
  KAG3281026 (Get FASTA)   NCBI Sequence Viewer  
  KAG3281027 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005339473   ⟸   XM_005339416
- Sequence:
RefSeq Acc Id: ENSSTOP00000004091   ⟸   ENSSTOT00000004560
RefSeq Acc Id: ENSSTOP00000019954   ⟸   ENSSTOT00000021547
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004574 Ensembl, UniProtKB/TrEMBL
  ENSSTOG00000021702 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004560.2 UniProtKB/TrEMBL
  ENSSTOT00000021547.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC101978551 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 418 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt I3M4H2_ICTTR UniProtKB/TrEMBL
  I3N6F8_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-14 LOC101978551  olfactory receptor 10J1  LOC101970512  olfactory receptor 10J4  Data merged from RGD:12599325 737654 PROVISIONAL