Sidt2 (SID1 transmembrane family member 2) - Rat Genome Database

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Gene: Sidt2 (SID1 transmembrane family member 2) Ictidomys tridecemlineatus
Analyze
Symbol: Sidt2
Name: SID1 transmembrane family member 2
RGD ID: 12506748
Description: ENCODES a protein that exhibits AP-1 adaptor complex binding (inferred); AP-2 adaptor complex binding (inferred); double-stranded RNA binding (inferred); INVOLVED IN cell morphogenesis (ortholog); glucose homeostasis (ortholog); regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); Chromosome 11, Partial Trisomy 11q (ortholog); Dwarfism (ortholog); FOUND IN lysosomal membrane (inferred); lysosome (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SID1 transmembrane family member 2, transcript variant X1; SID1 transmembrane family member 2, transcript variant X2; SID1 transmembrane family member 2, transcript variant X3; SID1 transmembrane family member 2, transcript variant X4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494799,505,528 - 99,522,309 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365422,426,937 - 2,443,721 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365422,426,937 - 2,443,721 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sidt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494799,505,528 - 99,522,309 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365422,426,937 - 2,443,721 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365422,426,937 - 2,443,721 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SIDT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811117,178,743 - 117,197,442 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11117,178,736 - 117,197,445 (+)EnsemblGRCh38hg38GRCh38
GRCh3711117,049,459 - 117,068,158 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611116,555,149 - 116,573,371 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411116,555,106 - 116,573,371NCBI
Celera11114,207,559 - 114,225,784 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11112,982,734 - 113,000,959 (+)NCBIHuRef
CHM1_111116,934,801 - 116,952,996 (+)NCBICHM1_1
T2T-CHM13v2.011117,194,038 - 117,212,742 (+)NCBIT2T-CHM13v2.0
Sidt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39945,849,155 - 45,869,299 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl945,849,155 - 45,866,556 (-)EnsemblGRCm39 Ensembl
GRCm38945,937,857 - 45,958,000 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl945,937,857 - 45,955,258 (-)EnsemblGRCm38mm10GRCm38
MGSCv37945,745,958 - 45,763,332 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36945,688,870 - 45,706,244 (-)NCBIMGSCv36mm8
Celera943,221,028 - 43,239,494 (-)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map925.36NCBI
Sidt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8855,129,091 - 55,146,446 (-)NCBIGRCr8
mRatBN7.2846,232,379 - 46,248,913 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl846,232,383 - 46,248,700 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx851,732,758 - 51,749,077 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0850,011,525 - 50,027,844 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0847,875,797 - 47,892,116 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0850,230,335 - 50,246,979 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl850,230,339 - 50,246,656 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0848,854,804 - 48,871,396 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4848,909,652 - 48,925,969 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1848,918,429 - 48,934,295 (-)NCBI
Celera845,814,932 - 45,831,249 (-)NCBICelera
Cytogenetic Map8q22NCBI
Sidt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541218,505,453 - 18,522,082 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541218,505,453 - 18,521,667 (+)NCBIChiLan1.0ChiLan1.0
SIDT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29117,875,546 - 117,897,040 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111118,984,406 - 119,003,060 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011112,012,734 - 112,031,403 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111115,945,562 - 115,964,787 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11115,946,725 - 115,963,408 (+)Ensemblpanpan1.1panPan2
SIDT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1516,397,532 - 16,410,827 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl516,398,815 - 16,411,268 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha516,449,904 - 16,464,935 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0516,341,802 - 16,356,831 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl516,341,813 - 16,357,595 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1516,480,045 - 16,495,069 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0516,382,498 - 16,397,535 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0516,424,733 - 16,439,751 (-)NCBIUU_Cfam_GSD_1.0
SIDT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl944,543,701 - 44,559,715 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1944,543,648 - 44,559,717 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2949,613,137 - 49,629,036 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SIDT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11108,550,091 - 108,568,470 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1108,549,792 - 108,569,172 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604317,486,021 - 17,504,758 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sidt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478412,635,078 - 12,651,713 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000011023   ⟹   ENSSTOP00000009888
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365422,426,937 - 2,443,721 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000041494   ⟹   ENSSTOP00000031362
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365422,426,967 - 2,443,721 (+)Ensembl
RefSeq Acc Id: XM_005328295   ⟹   XP_005328352
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494799,505,716 - 99,522,309 (+)NCBI
SpeTri2.0NW_0049365422,427,189 - 2,443,721 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005328296   ⟹   XP_005328353
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494799,505,716 - 99,522,309 (+)NCBI
SpeTri2.0NW_0049365422,427,189 - 2,443,721 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005328297   ⟹   XP_005328354
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494799,505,528 - 99,522,309 (+)NCBI
SpeTri2.0NW_0049365422,426,937 - 2,443,721 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013359993   ⟹   XP_013215447
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494799,505,716 - 99,522,309 (+)NCBI
SpeTri2.0NW_0049365422,427,189 - 2,443,721 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040285271   ⟹   XP_040141205
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494799,505,716 - 99,522,309 (+)NCBI
RefSeq Acc Id: XM_040285272   ⟹   XP_040141206
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494799,505,716 - 99,522,309 (+)NCBI
RefSeq Acc Id: XM_040285273   ⟹   XP_040141207
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494799,505,716 - 99,522,309 (+)NCBI
RefSeq Acc Id: XM_040285274   ⟹   XP_040141208
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494799,506,179 - 99,522,309 (+)NCBI
RefSeq Acc Id: XM_040285275   ⟹   XP_040141209
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494799,508,314 - 99,522,309 (+)NCBI
RefSeq Acc Id: XR_002484287
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494799,505,716 - 99,519,356 (+)NCBI
SpeTri2.0NW_0049365422,427,188 - 2,442,122 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005328354   ⟸   XM_005328297
- Peptide Label: isoform X7
- UniProtKB: I3MGJ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005328352   ⟸   XM_005328295
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013215447   ⟸   XM_013359993
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_005328353   ⟸   XM_005328296
- Peptide Label: isoform X5
- UniProtKB: A0A287DCR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040141205   ⟸   XM_040285271
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040141207   ⟸   XM_040285273
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040141206   ⟸   XM_040285272
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040141208   ⟸   XM_040285274
- Peptide Label: isoform X8
RefSeq Acc Id: XP_040141209   ⟸   XM_040285275
- Peptide Label: isoform X8
RefSeq Acc Id: ENSSTOP00000009888   ⟸   ENSSTOT00000011023
RefSeq Acc Id: ENSSTOP00000031362   ⟸   ENSSTOT00000041494


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011013 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011023.3 UniProtKB/TrEMBL
  ENSSTOT00000041494.1 UniProtKB/TrEMBL
InterPro SID1_TM_fam UniProtKB/TrEMBL
NCBI Gene Sidt2 ENTREZGENE
PANTHER PTHR12185 UniProtKB/TrEMBL
  SID1 TRANSMEMBRANE FAMILY MEMBER 2 UniProtKB/TrEMBL
Pfam SID-1_RNA_chan UniProtKB/TrEMBL
UniProt A0A287DCR9 ENTREZGENE, UniProtKB/TrEMBL
  I3MGJ0 ENTREZGENE, UniProtKB/TrEMBL