Tmed4 (transmembrane p24 trafficking protein 4) - Rat Genome Database

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Gene: Tmed4 (transmembrane p24 trafficking protein 4) Ictidomys tridecemlineatus
Analyze
Symbol: Tmed4
Name: transmembrane p24 trafficking protein 4
RGD ID: 12506371
Description: INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (inferred); Golgi organization (inferred); intracellular protein transport (inferred); ASSOCIATED WITH genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN COPII-coated ER to Golgi transport vesicle (inferred); cytoplasm (inferred); endoplasmic reticulum (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transmembrane emp24 domain-containing protein 4; transmembrane p24 trafficking protein 4, transcript variant X1; transmembrane p24 trafficking protein 4, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118100,265,967 - 100,270,922 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647819,477,698 - 19,482,706 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647819,477,698 - 19,482,656 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tmed4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118100,265,967 - 100,270,922 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647819,477,698 - 19,482,706 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647819,477,698 - 19,482,656 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMED4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38744,577,894 - 44,582,231 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl744,577,894 - 44,582,287 (-)EnsemblGRCh38hg38GRCh38
GRCh37744,617,493 - 44,621,830 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36744,585,287 - 44,588,352 (-)NCBINCBI36Build 36hg18NCBI36
Build 34744,392,002 - 44,395,067NCBI
Celera744,717,606 - 44,720,671 (-)NCBICelera
Cytogenetic Map7p13NCBI
HuRef744,503,138 - 44,506,203 (-)NCBIHuRef
CHM1_1744,623,158 - 44,626,223 (-)NCBICHM1_1
T2T-CHM13v2.0744,737,656 - 44,741,987 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2744,658,279 - 44,661,344 (-)NCBI
Tmed4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,220,714 - 6,224,837 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl116,220,369 - 6,224,870 (-)EnsemblGRCm39 Ensembl
GRCm38116,270,714 - 6,274,837 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,270,369 - 6,274,870 (-)EnsemblGRCm38mm10GRCm38
MGSCv37116,170,717 - 6,174,840 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36116,170,717 - 6,174,840 (-)NCBIMGSCv36mm8
Celera116,752,660 - 6,756,791 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.94NCBI
Tmed4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81485,338,980 - 85,343,577 (-)NCBIGRCr8
mRatBN7.21481,125,049 - 81,129,646 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1481,125,053 - 81,129,631 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1485,525,765 - 85,530,504 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01486,765,848 - 86,770,587 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01483,215,174 - 83,219,913 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01486,390,327 - 86,395,151 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1486,390,338 - 86,395,135 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01487,351,512 - 87,356,335 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41486,997,282 - 87,001,869 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11487,016,423 - 87,021,016 (-)NCBI
Celera1480,007,995 - 80,012,582 (-)NCBICelera
Cytogenetic Map14q21NCBI
Tmed4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554567,500,848 - 7,504,310 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554567,500,848 - 7,504,310 (+)NCBIChiLan1.0ChiLan1.0
TMED4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2649,487,406 - 49,494,805 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1797,811,961 - 97,819,543 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0745,289,666 - 45,297,030 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1745,358,692 - 45,366,036 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl745,361,693 - 45,366,395 (-)Ensemblpanpan1.1panPan2
TMED4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha162,355,451 - 2,357,820 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01614,503,747 - 14,506,117 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1614,503,778 - 14,516,659 (+)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.01614,135,234 - 14,137,604 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01614,115,849 - 14,118,219 (+)NCBIUU_Cfam_GSD_1.0
TMED4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1850,699,470 - 50,702,705 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11850,698,819 - 50,702,333 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21855,602,126 - 55,605,640 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMED4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12114,095,120 - 14,099,415 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2114,095,538 - 14,098,321 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660628,431,190 - 8,440,353 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmed4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247407,558,717 - 7,562,517 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247407,549,549 - 7,562,517 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000014660   ⟹   ENSSTOP00000013132
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647819,477,698 - 19,482,706 (-)Ensembl
RefSeq Acc Id: XM_005319243   ⟹   XP_005319300
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118100,265,967 - 100,270,922 (-)NCBI
SpeTri2.0NW_00493647819,477,698 - 19,482,656 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021722319   ⟹   XP_021577994
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118100,265,967 - 100,270,861 (-)NCBI
SpeTri2.0NW_00493647819,477,698 - 19,482,604 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005319300 (Get FASTA)   NCBI Sequence Viewer  
  XP_021577994 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000013132.2
GenBank Protein KAG3278230 (Get FASTA)   NCBI Sequence Viewer  
  KAG3278231 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005319300   ⟸   XM_005319243
- Peptide Label: isoform X1
- UniProtKB: I3MNC1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021577994   ⟸   XM_021722319
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSTOP00000013132   ⟸   ENSSTOT00000014660
Protein Domains
GOLD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014658 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014660.3 UniProtKB/TrEMBL
InterPro Emp24-like UniProtKB/TrEMBL
  GOLD_dom UniProtKB/TrEMBL
NCBI Gene Tmed4 ENTREZGENE
PANTHER PTHR22811 UniProtKB/TrEMBL
  TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 4 UniProtKB/TrEMBL
Pfam EMP24_GP25L UniProtKB/TrEMBL
PROSITE GOLD UniProtKB/TrEMBL
SMART EMP24_GP25L UniProtKB/TrEMBL
UniProt I3MNC1 ENTREZGENE, UniProtKB/TrEMBL