Clec4e (C-type lectin domain family 4 member E) - Rat Genome Database

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Gene: Clec4e (C-type lectin domain family 4 member E) Ictidomys tridecemlineatus
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Symbol: Clec4e
Name: C-type lectin domain family 4 member E
RGD ID: 12505209
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); glycolipid binding (ortholog); pattern recognition receptor activity (ortholog); INVOLVED IN antifungal innate immune response (ortholog); defense response to bacterium (ortholog); Fc-gamma receptor signaling pathway (ortholog); ASSOCIATED WITH Brain Injuries (ortholog); developmental and epileptic encephalopathy 21 (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); FOUND IN membrane (ortholog); phagocytic vesicle membrane (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494599,900,137 - 99,906,784 (-)NCBI
SpeTri2.0NW_004936858316,954 - 321,668 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Clec4e
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494599,900,137 - 99,906,784 (-)NCBI
SpeTri2.0NW_004936858316,954 - 321,668 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLEC4E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl128,533,305 - 8,540,905 (-)EnsemblGRCh38hg38GRCh38
GRCh38128,533,305 - 8,541,327 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37128,685,901 - 8,693,501 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36128,577,168 - 8,584,825 (-)NCBINCBI36hg18NCBI36
Build 34128,577,167 - 8,584,811NCBI
Celera1210,221,897 - 10,229,555 (-)NCBI
Cytogenetic Map12p13.31NCBI
HuRef128,468,250 - 8,475,908 (-)NCBIHuRef
CHM1_1128,654,869 - 8,662,532 (-)NCBICHM1_1
Clec4e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396123,258,748 - 123,266,830 (-)NCBIGRCm39mm39
GRCm39 Ensembl6123,258,748 - 123,266,829 (-)Ensembl
GRCm386123,281,789 - 123,289,871 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6123,281,789 - 123,289,870 (-)EnsemblGRCm38mm10GRCm38
MGSCv376123,231,807 - 123,239,889 (-)NCBIGRCm37mm9NCBIm37
MGSCv366123,247,408 - 123,255,490 (-)NCBImm8
Celera6125,079,435 - 125,087,544 (-)NCBICelera
Cytogenetic Map6F2NCBI
cM Map658.35NCBI
Clec4e
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24156,606,927 - 156,612,911 (-)NCBI
Rnor_6.0 Ensembl4156,270,920 - 156,276,304 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04156,271,087 - 156,276,243 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04223,287,319 - 223,293,143 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44159,901,953 - 159,907,090 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14160,146,888 - 160,152,042 (-)NCBI
Celera4145,397,723 - 145,402,880 (-)NCBICelera
Cytogenetic Map4q42NCBI
Clec4e
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554135,256,440 - 5,262,938 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554135,256,523 - 5,261,385 (+)NCBIChiLan1.0ChiLan1.0
CLEC4E
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1128,835,598 - 8,842,081 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0128,620,618 - 8,627,610 (-)NCBIMhudiblu_PPA_v0panPan3
LOC611538
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12737,561,445 - 37,568,652 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2737,563,038 - 37,568,463 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha279,047,754 - 9,054,953 (+)NCBI
ROS_Cfam_1.02737,914,984 - 37,922,184 (-)NCBI
UMICH_Zoey_3.12737,789,556 - 37,796,752 (-)NCBI
UNSW_CanFamBas_1.02737,831,158 - 37,838,354 (-)NCBI
UU_Cfam_GSD_1.0278,534,492 - 8,541,692 (+)NCBI
CLEC4E
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1563,219,229 - 63,228,566 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CLEC4E
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1118,315,888 - 8,322,240 (-)NCBI
ChlSab1.1 Ensembl118,316,049 - 8,321,274 (-)Ensembl
Clec4e
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248604,108,782 - 4,113,693 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005341255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005341255   ⟹   XP_005341312
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494599,900,137 - 99,906,784 (-)NCBI
SpeTri2.0NW_004936858316,954 - 321,668 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005341312 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005341312   ⟸   XM_005341255
- UniProtKB: I3N451 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
C-type lectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000024586 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000019147 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOP00000027632 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000022086 UniProtKB/TrEMBL
  ENSSTOT00000033720 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/TrEMBL
  CD209-like_CTLD UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
NCBI Gene Clec4e ENTREZGENE
Pfam Lectin_C UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_1 UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt A0A287D282_ICTTR UniProtKB/TrEMBL
  I3N451 ENTREZGENE, UniProtKB/TrEMBL