Fam98a (family with sequence similarity 98 member A) - Rat Genome Database

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Gene: Fam98a (family with sequence similarity 98 member A) Ictidomys tridecemlineatus
Analyze
Symbol: Fam98a
Name: family with sequence similarity 98 member A
RGD ID: 12503749
Description: ENCODES a protein that exhibits protein methyltransferase activity (inferred); INVOLVED IN lysosome localization (inferred); positive regulation of cell population proliferation (inferred); positive regulation of gene expression (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629270,747,061 - 70,761,936 (-)NCBI
SpeTri2.0NW_00493649377,729 - 92,427 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Fam98a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629270,747,061 - 70,761,936 (-)NCBI
SpeTri2.0NW_00493649377,729 - 92,427 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM98A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38233,583,660 - 33,599,299 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl233,532,744 - 33,599,347 (-)EnsemblGRCh38hg38GRCh38
GRCh37233,808,727 - 33,824,366 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36233,662,233 - 33,677,866 (-)NCBINCBI36hg18NCBI36
Celera233,647,433 - 33,663,066 (-)NCBI
Cytogenetic Map2p22.3NCBI
HuRef233,542,677 - 33,558,311 (-)NCBIHuRef
CHM1_1233,738,047 - 33,753,682 (-)NCBICHM1_1
Fam98a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391775,844,080 - 75,858,941 (-)NCBIGRCm39mm39
GRCm39 Ensembl1775,844,081 - 75,858,941 (-)Ensembl
GRCm381775,537,085 - 75,551,946 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1775,537,086 - 75,551,946 (-)EnsemblGRCm38mm10GRCm38
MGSCv371775,936,426 - 75,951,286 (-)NCBIGRCm37mm9NCBIm37
MGSCv361775,442,151 - 75,456,903 (-)NCBImm8
Celera1779,829,748 - 79,844,400 (-)NCBICelera
Cytogenetic Map17E2NCBI
Fam98a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2619,874,082 - 19,888,744 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl619,874,071 - 19,888,742 (+)Ensembl
Rnor_6.0621,051,327 - 21,065,986 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl621,051,327 - 21,065,986 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0630,945,057 - 30,959,716 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4619,787,146 - 19,801,805 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1619,790,098 - 19,804,756 (+)NCBI
Celera619,443,061 - 19,457,708 (+)NCBICelera
Cytogenetic Map6q12NCBI
Fam98a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554411,799,453 - 1,814,652 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554411,799,453 - 1,814,096 (-)NCBIChiLan1.0ChiLan1.0
FAM98A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A34,303,009 - 34,318,627 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A34,303,009 - 34,318,627 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A33,591,783 - 33,607,386 (-)NCBIMhudiblu_PPA_v0panPan3
FAM98A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11726,671,254 - 26,687,808 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1726,671,948 - 26,688,447 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1726,463,930 - 26,479,926 (-)NCBI
ROS_Cfam_1.01727,240,776 - 27,256,783 (-)NCBI
ROS_Cfam_1.0 Ensembl1727,240,780 - 27,256,742 (-)Ensembl
UMICH_Zoey_3.11726,536,375 - 26,552,368 (-)NCBI
UNSW_CanFamBas_1.01726,610,259 - 26,626,280 (-)NCBI
UU_Cfam_GSD_1.01726,766,760 - 26,782,758 (-)NCBI
FAM98A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3106,061,573 - 106,081,177 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13106,061,567 - 106,081,177 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23112,931,682 - 112,949,328 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM98A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11473,861,331 - 73,877,277 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604538,134,240 - 38,149,846 (-)NCBIVero_WHO_p1.0
Fam98a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473815,251,594 - 15,266,508 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005322459   ⟹   XP_005322516
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629270,747,061 - 70,761,886 (-)NCBI
SpeTri2.0NW_00493649377,729 - 92,427 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040271565   ⟹   XP_040127499
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629270,747,061 - 70,761,936 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005322516 (Get FASTA)   NCBI Sequence Viewer  
  XP_040127499 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005322516   ⟸   XM_005322459
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040127499   ⟸   XM_040271565
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010483 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000009414 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010490 UniProtKB/TrEMBL
InterPro FAM98 UniProtKB/TrEMBL
NCBI Gene Fam98a ENTREZGENE
PANTHER PTHR31353 UniProtKB/TrEMBL
Pfam DUF2465 UniProtKB/TrEMBL
UniProt I3MFK9_ICTTR UniProtKB/TrEMBL