Ankrd13a (ankyrin repeat domain 13A) - Rat Genome Database

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Gene: Ankrd13a (ankyrin repeat domain 13A) Ictidomys tridecemlineatus
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Symbol: Ankrd13a
Name: ankyrin repeat domain 13A
RGD ID: 12503329
Description: ENCODES a protein that exhibits ubiquitin-dependent protein binding (ortholog); INVOLVED IN negative regulation of protein localization to endosome (ortholog); negative regulation of receptor internalization (ortholog); FOUND IN cytoplasm (ortholog); late endosome (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ankyrin repeat domain-containing protein 13A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118143,858,198 - 143,894,383 (-)NCBI
SpeTri2.0NW_0049367691,581,517 - 1,617,696 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Ankrd13a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118143,858,198 - 143,894,383 (-)NCBI
SpeTri2.0NW_0049367691,581,517 - 1,617,696 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD13A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12109,999,186 - 110,039,763 (+)EnsemblGRCh38hg38GRCh38
GRCh3812109,999,169 - 110,039,763 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712110,437,235 - 110,477,568 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612108,921,618 - 108,961,620 (+)NCBINCBI36hg18NCBI36
Build 3412108,899,954 - 108,939,953NCBI
Celera12110,061,469 - 110,101,471 (+)NCBI
Cytogenetic Map12q24.11NCBI
HuRef12107,452,978 - 107,493,242 (+)NCBIHuRef
CHM1_112110,405,030 - 110,445,032 (+)NCBICHM1_1
Ankrd13a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395114,913,009 - 114,943,882 (+)NCBIGRCm39mm39
GRCm39 Ensembl5114,912,738 - 114,944,261 (+)Ensembl
GRCm385114,774,948 - 114,805,821 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5114,774,677 - 114,806,200 (+)EnsemblGRCm38mm10GRCm38
MGSCv375115,225,149 - 115,255,830 (+)NCBIGRCm37mm9NCBIm37
MGSCv365115,036,139 - 115,066,820 (+)NCBImm8
Celera5111,873,346 - 111,903,995 (+)NCBICelera
Cytogenetic Map5FNCBI
Ankrd13a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21241,798,196 - 41,828,327 (-)NCBI
Rnor_6.0 Ensembl1247,558,590 - 47,588,335 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01247,558,587 - 47,588,486 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01249,352,113 - 49,382,397 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41243,086,125 - 43,115,877 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11242,949,513 - 42,979,265 (-)NCBI
Celera1243,413,708 - 43,443,457 (-)NCBICelera
Cytogenetic Map12q16NCBI
Ankrd13a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554558,576,406 - 8,610,995 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554558,576,406 - 8,610,878 (-)NCBIChiLan1.0ChiLan1.0
ANKRD13A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112110,970,433 - 111,009,773 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12110,979,786 - 111,007,899 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012107,575,427 - 107,615,706 (+)NCBIMhudiblu_PPA_v0panPan3
ANKRD13A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12617,135,500 - 17,168,003 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2617,137,297 - 17,167,932 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2618,634,213 - 18,666,708 (+)NCBI
ROS_Cfam_1.02617,479,956 - 17,512,486 (-)NCBI
UMICH_Zoey_3.12618,843,776 - 18,876,267 (+)NCBI
UNSW_CanFamBas_1.02617,469,736 - 17,502,237 (-)NCBI
UU_Cfam_GSD_1.02617,487,197 - 17,519,707 (-)NCBI
ANKRD13A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1440,954,345 - 40,990,422 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11440,954,345 - 40,995,882 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21443,479,735 - 43,506,000 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD13A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111105,238,471 - 105,280,712 (+)NCBI
Ankrd13a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474710,479,421 - 10,515,492 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005340121   ⟹   XP_005340178
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118143,858,198 - 143,894,383 (-)NCBI
SpeTri2.0NW_0049367691,581,517 - 1,617,696 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013365111   ⟹   XP_013220565
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118143,858,198 - 143,894,347 (-)NCBI
SpeTri2.0NW_0049367691,581,535 - 1,617,696 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040289349   ⟹   XP_040145283
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118143,858,198 - 143,894,348 (-)NCBI
RefSeq Acc Id: XM_040289350   ⟹   XP_040145284
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118143,858,198 - 143,894,346 (-)NCBI
RefSeq Acc Id: XM_040289351   ⟹   XP_040145285
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118143,858,198 - 143,894,349 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005340178   ⟸   XM_005340121
- Peptide Label: isoform X2
- UniProtKB: I3M4K2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013220565   ⟸   XM_013365111
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040145285   ⟸   XM_040289351
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040145283   ⟸   XM_040289349
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040145284   ⟸   XM_040289350
- Peptide Label: isoform X4
Protein Domains
ANK_REP_REGION


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004611 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000004138 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004612 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro ANKRD13 UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_dom UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  UIM_dom UniProtKB/TrEMBL
NCBI Gene Ankrd13a ENTREZGENE
PANTHER PTHR12447 UniProtKB/TrEMBL
Pfam GPCR_chapero_1 UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  UIM UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  UIM UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt I3M4K2 ENTREZGENE, UniProtKB/TrEMBL