Cd109 (CD109 molecule) - Rat Genome Database

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Gene: Cd109 (CD109 molecule) Ictidomys tridecemlineatus
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Symbol: Cd109
Name: CD109 molecule
RGD ID: 12502941
Description: ENCODES a protein that exhibits transforming growth factor beta binding (ortholog); INVOLVED IN hair follicle development (ortholog); negative regulation of keratinocyte proliferation (ortholog); negative regulation of protein phosphorylation (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Colorectal Neoplasms (ortholog); High Myopia (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: CD109 antigen
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494671,014,831 - 71,146,089 (+)NCBI
SpeTri2.0NW_004936859467,958 - 595,337 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
plasma membrane  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
Cd109
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494671,014,831 - 71,146,089 (+)NCBI
SpeTri2.0NW_004936859467,958 - 595,337 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD109
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl673,695,785 - 73,828,316 (+)EnsemblGRCh38hg38GRCh38
GRCh38673,696,203 - 73,828,313 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37674,405,926 - 74,538,037 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36674,462,235 - 74,594,761 (+)NCBINCBI36hg18NCBI36
Build 34674,462,547 - 74,591,509NCBI
Celera674,800,739 - 74,932,977 (+)NCBI
Cytogenetic Map6q13NCBI
HuRef671,605,012 - 71,737,517 (+)NCBIHuRef
CHM1_1674,572,228 - 74,704,279 (+)NCBICHM1_1
Cd109
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39978,522,828 - 78,623,542 (+)NCBIGRCm39mm39
GRCm39 Ensembl978,522,828 - 78,623,535 (+)Ensembl
GRCm38978,615,546 - 78,716,260 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl978,615,546 - 78,716,253 (+)EnsemblGRCm38mm10GRCm38
MGSCv37978,463,353 - 78,564,067 (+)NCBIGRCm37mm9NCBIm37
MGSCv36978,401,461 - 78,501,937 (+)NCBImm8
Celera975,790,926 - 75,891,369 (+)NCBICelera
Cytogenetic Map9E1NCBI
Cd109
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2879,454,480 - 79,569,195 (+)NCBI
Rnor_6.0 Ensembl885,951,191 - 86,065,409 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0885,951,420 - 86,065,411 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0885,500,667 - 85,615,070 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4883,576,559 - 83,672,664 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1883,578,579 - 83,692,225 (+)NCBI
Celera879,200,276 - 79,310,457 (+)NCBICelera
Cytogenetic Map8q31NCBI
Cd109
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554889,281,661 - 9,378,490 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554889,281,407 - 9,378,354 (-)NCBIChiLan1.0ChiLan1.0
CD109
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1674,801,384 - 74,937,414 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl674,801,384 - 74,937,414 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0671,519,293 - 71,654,300 (+)NCBIMhudiblu_PPA_v0panPan3
CD109
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11235,712,589 - 35,839,153 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1235,712,271 - 35,839,044 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1235,583,900 - 35,710,288 (+)NCBI
ROS_Cfam_1.01236,269,369 - 36,395,815 (+)NCBI
UMICH_Zoey_3.11235,808,332 - 35,938,613 (+)NCBI
UNSW_CanFamBas_1.01235,830,291 - 35,960,639 (+)NCBI
UU_Cfam_GSD_1.01235,954,644 - 36,085,062 (+)NCBI
CD109
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl192,048,461 - 92,286,747 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1192,081,675 - 92,241,079 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21103,135,603 - 103,292,354 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD109
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1171,322,681 - 1,461,945 (-)NCBI
ChlSab1.1 Ensembl171,324,105 - 1,416,491 (-)Ensembl
Cd109
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624819861,095 - 1,013,674 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005341260   ⟹   XP_005341317
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494671,014,856 - 71,146,089 (+)NCBI
SpeTri2.0NW_004936859467,958 - 595,310 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021720804   ⟹   XP_021576479
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494671,014,831 - 71,146,089 (+)NCBI
SpeTri2.0NW_004936859467,958 - 595,337 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005341317 (Get FASTA)   NCBI Sequence Viewer  
  XP_021576479 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005341317   ⟸   XM_005341260
- Sequence:
RefSeq Acc Id: XP_021576479   ⟸   XM_021720804
- Sequence:
Protein Domains
A2M   A2M_N_2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000030419 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000026713 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000042510 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro A2M_N_BRD UniProtKB/TrEMBL
  A2M_TED UniProtKB/TrEMBL
  Alpha-macroglobulin_TED UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  Macroglobln_a2 UniProtKB/TrEMBL
  MacrogloblnA2_CS UniProtKB/TrEMBL
  MG2 UniProtKB/TrEMBL
  MG3 UniProtKB/TrEMBL
  Terpenoid_cyclase/PrenylTrfase UniProtKB/TrEMBL
NCBI Gene Cd109 ENTREZGENE
Pfam A2M UniProtKB/TrEMBL
  A2M_BRD UniProtKB/TrEMBL
  MG2 UniProtKB/TrEMBL
  MG3 UniProtKB/TrEMBL
  TED_complement UniProtKB/TrEMBL
PROSITE ALPHA_2_MACROGLOBULIN UniProtKB/TrEMBL
SMART A2M UniProtKB/TrEMBL
  A2M_N_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF48239 UniProtKB/TrEMBL
  SSF81296 UniProtKB/TrEMBL
UniProt A0A287CZK6_ICTTR UniProtKB/TrEMBL