LOC101977053 (IST1 factor associated with ESCRT-III)

Gene: LOC101977053 (IST1 factor associated with ESCRT-III) Ictidomys tridecemlineatus

Analyze

Symbol:

LOC101977053 (Ensembl: IST1)

Name:

IST1 factor associated with ESCRT-III

RGD ID:

12502394

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN collateral sprouting (ortholog); positive regulation of collateral sprouting (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); genetic disease (ortholog); FOUND IN extracellular exosome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Ist1; IST1 homolog; IST1, ESCRT-III associated factor; IST1, ESCRT-III associated factor, transcript variant X1; IST1, ESCRT-III associated factor, transcript variant X2; IST1, ESCRT-III associated factor, transcript variant X3; IST1, ESCRT-III associated factor, transcript variant X4; IST1, ESCRT-III associated factor, transcript variant X5

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	37,680,804 - 37,699,103 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	21,890,013 - 21,908,245 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	21,890,011 - 21,908,256 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant dyskeratosis congenita 6 (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

abscission (IEA)

cell division (IEA)

collateral sprouting (IEA,ISO)

cytoskeleton-dependent cytokinesis (IEA)

establishment of protein localization (IEA)

positive regulation of collateral sprouting (IEA,ISO)

positive regulation of proteolysis (IEA)

protein localization (IEA)

protein transport (IEA)

viral capsid secondary envelopment (IEA)

viral release from host cell (IEA)

Cellular Component

centrosome (IEA)

chromatin (IEA)

cytosol (IEA)

endoplasmic reticulum-Golgi intermediate compartment (IEA)

extracellular exosome (ISO)

Flemming body (IEA)

intracellular membrane-bounded organelle (IEA)

midbody (IEA)

Molecular Function

identical protein binding (ISO)

MIT domain binding (IEA)

protein binding (ISO)

protein domain specific binding (IEA)

protein-containing complex binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LOC101977053
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	37,680,804 - 37,699,103 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	21,890,013 - 21,908,245 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	21,890,011 - 21,908,256 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IST1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	71,894,408 - 71,931,199 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	71,845,996 - 71,931,199 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	71,928,311 - 71,965,102 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	70,486,947 - 70,520,407 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	56,243,371 - 56,276,822 (+)	NCBI		Celera
Cytogenetic Map	16	q22.2	NCBI
HuRef	16	57,696,177 - 57,731,724 (+)	NCBI		HuRef
CHM1_1	16	73,341,627 - 73,377,874 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	77,711,542 - 77,748,323 (+)	NCBI		T2T-CHM13v2.0

Ist1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	110,397,953 - 110,419,929 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	110,397,957 - 110,419,892 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	109,671,321 - 109,693,297 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	109,671,325 - 109,693,260 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	112,195,221 - 112,217,194 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	112,560,458 - 112,582,393 (-)	NCBI		MGSCv36	mm8
Celera	8	113,896,960 - 113,918,958 (-)	NCBI		Celera
Cytogenetic Map	8	D3	NCBI
cM Map	8	57.18	NCBI

Ist1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	54,558,353 - 54,580,551 (-)	NCBI		GRCr8
mRatBN7.2	19	37,648,840 - 37,671,019 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	37,648,095 - 37,670,956 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	44,461,787 - 44,483,896 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	45,115,119 - 45,137,228 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	47,424,730 - 47,446,839 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	41,968,692 - 41,990,843 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	41,968,705 - 41,990,843 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	52,793,716 - 52,815,862 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	39,554,205 - 39,576,343 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	39,559,093 - 39,581,181 (-)	NCBI
Celera	19	37,052,746 - 37,074,884 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

Ist1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955484	4,589,311 - 4,630,203 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955484	4,589,311 - 4,630,464 (+)	NCBI	ChiLan1.0	ChiLan1.0

IST1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	82,231,091 - 82,313,273 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	88,158,887 - 88,202,426 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	53,082,530 - 53,115,965 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	71,733,868 - 71,765,969 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	71,733,302 - 71,765,969 (+)	Ensembl	panpan1.1		panPan2

IST1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	77,660,033 - 77,693,831 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	77,660,081 - 77,692,396 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	77,621,109 - 77,655,606 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	78,099,321 - 78,133,852 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	78,098,618 - 78,133,639 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	77,919,418 - 77,953,932 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	77,742,127 - 77,776,623 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	78,241,426 - 78,275,957 (+)	NCBI		UU_Cfam_GSD_1.0

IST1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	14,836,752 - 14,911,311 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	14,868,859 - 14,910,679 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	14,465,663 - 14,489,764 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

IST1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	55,030,916 - 55,063,824 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	55,050,795 - 55,064,549 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	17,832,602 - 17,864,267 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005318388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013366381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013366384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013366386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021721713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279148	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279149	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000001022 ⟹ ENSSTOP00000000917

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936475	21,890,013 - 21,908,245 (-)	Ensembl

RefSeq Acc Id:

XM_005318388 ⟹ XP_005318445

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	37,680,804 - 37,699,103 (+)	NCBI
SpeTri2.0	NW_004936475	21,890,011 - 21,908,256 (-)	NCBI

Sequence:

show sequence

CCGAGCTTGCTGTGCTGAGGCCGAGGGAGCCGCCATTTTGGATGCTGGGCGACGTTTGCGAAGT
CGGTCTCTACTGTTTTCACGCCTGGATTCGACCAGGAGGAACAGTACAGCATGCTGGGCTCCGG
ATTTAAAGCTGAGCGTTTACGAGTCAATTTGAGATTAGTCATAAATCGTCTTAAACTATTGGAG
AAAAAAAAAACGGAACTGGCCCAGAAAGCAAGGAAGGAGATTGCTGACTATCTGGCTGCTGGGA
AAGATGAGAGAGCTCGTATTCGTGTGGAGCACATTATTCGGGAAGACTACCTCGTAGAGGCCAT
GGAGATCCTGGAGCTGTACTGTGACCTGCTGCTGGCTCGGTTTGGCCTCATCCAGTCTATGAAG
GAGCTAGATTCTGGTCTGGCCGAATCTGTGTCTACACTGATCTGGGCTGCTCCTCGACTCCAGT
CAGAAGTGGCTGAGTTGAAAATTGTTGCTGATCAGCTCTGTGCCAAATATAGCAAGGAATATGG
CAAGTTATGTAGGACCAACCAGATTGGAACTGTGAATGACAGGCTAATGCACAAACTGAGTGTG
GAAGCCCCACCCAAAATCCTGGTGGAGAGATACCTTATTGAAATTGCCAAGAATTACAATGTAC
CCTATGAACCTGACTCTGTGGTCATGGCAGAAGCTCCTCCTGGAGTAGAAACAGATCTCATTGA
TGTTGGATTCACAGATGATGTGAAGAAAGGTGGCCCTGGAAGAGGAGGAGGTGGTGGTGGGTTC
ACAGCACCTGTTGGTGGAACTGATGGAACAGTGCCAATGCCTATGCCTATGCCTATGCCCATGC
CATCTCCAAATCCTCCCTTCTCATATCCACTGCCTAAGGGACCATCGGATTTCAATGGCTTGCC
AGTGGGGACTTATCAGGCCTTTCCCAATATTAATCCACCTCAGATACCAGCAACTCCCCCATCA
TATGAATCTGTTGATGACATTAATGCTGATAAGAATATTTCTTCTGCACAGATAATTGGACCTG
GACCCAAGCAGGAAGCCTCTGCAAAGCCCCCTTCTAGACCTATGGATAACTATGACAACTTTGT
ACTGCCAGAGTTACCATCTGTGCCAGACACACTGCCAACTTCATCTGCTGGTGCCAGCAACTCA
GCTTCTGAAGACATTGACTTTGATGATCTTTCCCGGAGATTTGAAGAACTAAAAAAGAAGACAT
AGGTCTCTTAAATCAGGCAACCTCCACGTTCTGGAAGTTGAGACTGAGTAGTTTCTCCTTGTAA
CAAAGAATCTCCATGAAATTCCGTTTCATCTATTAACCATCACTGAGCGTGACACTCTTCCTTG
GGGCTCTCTTCCTGCTCTACCAAATTCTGTTGCTTTCCAGTTCTCTATTGAGACTAAGACACTA
ACAACTGGAGACTGAGGCCAGAACCCTGGCTCCTGGCAGTTGTGCCTGTTTCCTGACAGAGAGA
TCCCAGGTTTTCTCCCACAATCCTTCCCCAGGAGAATGAGAAGATGAAGCATTGTGAGGAGAGC
CACTGGAGATGGCTGGACTGTGGAGGAGAGCTCCTCATGAAGTGTCTCAGCCGTCAGTTGTGGT
TCCAGACTTGGAAACACTTCCCTCTGTACAGAGGGATTGTGCTGAGAATCAAAGCCACTGTGTG
TTTTCTCACTCTCTCATAAGTAGGAGAGAGAGAAAGTGGCTCAGGAAGCCATGGTAATGGTTCT
TGGAAGCTGGGCTCTTTCCTTGGCATGTACACTACTCCTTGCTGCAGGGCACTGTTCCACCTGG
ATCCAGTTGCAAAGTGGATTTCAAAAAAGTTGAAGGCCTCTCTTAGTTCTACTGGATTCTCAGG
GAGCCCTCTGTGGCCTTTTACTTTATTTTGAGTGCTGTTTCCCCCTTTTTACCAGAGAACAGCA
CTGTAGAATTTTGTTTTTGCCCATAGCATGTTAATAGCAGAGGGAGGACAGGTCACATATTGGG
CAGAAGTTGCTGTTCAAGCCTAGGGTGGGCTTCCAGCTGCCTTAATAGAAATACTCAAGTCTCT
TGGGTAGTGAGCTGGAAGGCCTACAGGAGAAGAGGGGAACCTGTTTTCATTTGAAAACTTTATG
ATTAAGGGAATCTTTAAAAACTGATTTCATATTTTTAGTGCCCATGTGACTATATTTCACTGCT
TTTCTGGGTGGATCAGACTTGTTTATTGTAACTTATGTGCTCCTTTGTCCCCTAAGGTCATCCT
TCCACACAGGGTTGGCTTTGAGATTAAAGATAGGATTTTTGCTTCTGTGTAGCACAGCTGTACA
TAACCTGTTTCAAGCAACTTTCTTCAATGTTATTGATTTGTATTTCATAGCTTGGTAGTTGCTA
ATAAAATTAGAAGATCCTGTGTC

hide sequence

RefSeq Acc Id:

XM_013366386 ⟹ XP_013221840

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	37,687,210 - 37,699,103 (+)	NCBI
SpeTri2.0	NW_004936475	21,890,011 - 21,901,904 (-)	NCBI

Sequence:

show sequence

GAGGAACAGTACAGCATGCTGGGCTCCGGATTTAAAGCTGAGCGTTTACGAGTCAATTTGAGAT
TAGTCATAAATCGTCTTAAACTATTGGAGAAAAAAAAAATGGGATTTGTGCCTTAGCGGAACTG
GCCCAGAAAGCAAGGAAGGAGATTGCTGACTATCTGGCTGCTGGGAAAGATGAGAGAGCTCGTA
TTCGTGTGGAGCACATTATTCGGGAAGACTACCTCGTAGAGGCCATGGAGATCCTGGAGCTGTA
CTGTGACCTGCTGCTGGCTCGGTTTGGCCTCATCCAGTCTATGAAGGAGCTAGATTCTGGTCTG
GCCGAATCTGTGTCTACACTGATCTGGGCTGCTCCTCGACTCCAGTCAGAAGTGGCTGAGTTGA
AAATTGTTGCTGATCAGCTCTGTGCCAAATATAGCAAGGAATATGGCAAGTTATGTAGGACCAA
CCAGATTGGAACTGTGAATGACAGGCTAATGCACAAACTGAGTGTGGAAGCCCCACCCAAAATC
CTGGTGGAGAGATACCTTATTGAAATTGCCAAGAATTACAATGTACCCTATGAACCTGACTCTG
TGGTCATGGCAGAAGCTCCTCCTGGAGTAGAAACAGATCTCATTGATGTTGGATTCACAGATGA
TGTGAAGAAAGGTGGCCCTGGAAGAGGAGGAGGTGGTGGTGGGTTCACAGCACCTGTTGGTGGA
ACTGATGGAACAGTGCCAATGCCTATGCCTATGCCTATGCCCATGCCATCTCCAAATCCTCCCT
TCTCATATCCACTGCCTAAGGGACCATCGGATTTCAATGGCTTGCCAGTGGGGACTTATCAGGC
CTTTCCCAATATTAATCCACCTCAGATACCAGCAACTCCCCCATCATATGAATCTGTTGATGAC
ATTAATGCTGATAAGAATATTTCTTCTGCACAGATAATTGGACCTGGACCCAAGCAGGAAGCCT
CTGCAAAGCCCCCTTCTAGACCTATGGATAACTATGACAACTTTGTACTGCCAGAGTTACCATC
TGTGCCAGACACACTGCCAACTTCATCTGCTGGTGCCAGCAACTCAGCTTCTGAAGACATTGAC
TTTGATGATCTTTCCCGGAGATTTGAAGAACTAAAAAAGAAGACATAGGTCTCTTAAATCAGGC
AACCTCCACGTTCTGGAAGTTGAGACTGAGTAGTTTCTCCTTGTAACAAAGAATCTCCATGAAA
TTCCGTTTCATCTATTAACCATCACTGAGCGTGACACTCTTCCTTGGGGCTCTCTTCCTGCTCT
ACCAAATTCTGTTGCTTTCCAGTTCTCTATTGAGACTAAGACACTAACAACTGGAGACTGAGGC
CAGAACCCTGGCTCCTGGCAGTTGTGCCTGTTTCCTGACAGAGAGATCCCAGGTTTTCTCCCAC
AATCCTTCCCCAGGAGAATGAGAAGATGAAGCATTGTGAGGAGAGCCACTGGAGATGGCTGGAC
TGTGGAGGAGAGCTCCTCATGAAGTGTCTCAGCCGTCAGTTGTGGTTCCAGACTTGGAAACACT
TCCCTCTGTACAGAGGGATTGTGCTGAGAATCAAAGCCACTGTGTGTTTTCTCACTCTCTCATA
AGTAGGAGAGAGAGAAAGTGGCTCAGGAAGCCATGGTAATGGTTCTTGGAAGCTGGGCTCTTTC
CTTGGCATGTACACTACTCCTTGCTGCAGGGCACTGTTCCACCTGGATCCAGTTGCAAAGTGGA
TTTCAAAAAAGTTGAAGGCCTCTCTTAGTTCTACTGGATTCTCAGGGAGCCCTCTGTGGCCTTT
TACTTTATTTTGAGTGCTGTTTCCCCCTTTTTACCAGAGAACAGCACTGTAGAATTTTGTTTTT
GCCCATAGCATGTTAATAGCAGAGGGAGGACAGGTCACATATTGGGCAGAAGTTGCTGTTCAAG
CCTAGGGTGGGCTTCCAGCTGCCTTAATAGAAATACTCAAGTCTCTTGGGTAGTGAGCTGGAAG
GCCTACAGGAGAAGAGGGGAACCTGTTTTCATTTGAAAACTTTATGATTAAGGGAATCTTTAAA
AACTGATTTCATATTTTTAGTGCCCATGTGACTATATTTCACTGCTTTTCTGGGTGGATCAGAC
TTGTTTATTGTAACTTATGTGCTCCTTTGTCCCCTAAGGTCATCCTTCCACACAGGGTTGGCTT
TGAGATTAAAGATAGGATTTTTGCTTCTGTGTAGCACAGCTGTACATAACCTGTTTCAAGCAAC
TTTCTTCAATGTTATTGATTTGTATTTCATAGCTTGGTAGTTGCTAATAAAATTAGAAGATCCT
GTGTC

hide sequence

RefSeq Acc Id:

XM_021721713 ⟹ XP_021577388

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	37,685,399 - 37,699,103 (+)	NCBI
SpeTri2.0	NW_004936475	21,890,011 - 21,903,408 (-)	NCBI

Sequence:

show sequence

TGTCCTCAATATTGAATTGGTATCAGGGACAAGGACCAAGCTTTTGGTAACATATTGGACAATA
TTAGTATGTGGAGGAACAGTACAGCATGCTGGGCTCCGGATTTAAAGCTGAGCGTTTACGAGTC
AATTTGAGATTAGTCATAAATCGTCTTAAACTATTGGAGAAAAAAAAAACGGAACTGGCCCAGA
AAGCAAGGAAGGAGATTGCTGACTATCTGGCTGCTGGGAAAGATGAGAGAGCTCGTATTCGTGT
GGAGCACATTATTCGGGAAGACTACCTCGTAGAGGCCATGGAGATCCTGGAGCTGTACTGTGAC
CTGCTGCTGGCTCGGTTTGGCCTCATCCAGTCTATGAAGGAGCTAGATTCTGGTCTGGCCGAAT
CTGTGTCTACACTGATCTGGGCTGCTCCTCGACTCCAGTCAGAAGTGGCTGAGTTGAAAATTGT
TGCTGATCAGCTCTGTGCCAAATATAGCAAGGAATATGGCAAGTTATGTAGGACCAACCAGATT
GGAACTGTGAATGACAGGCTAATGCACAAACTGAGTGTGGAAGCCCCACCCAAAATCCTGGTGG
AGAGATACCTTATTGAAATTGCCAAGAATTACAATGTACCCTATGAACCTGACTCTGTGGTCAT
GGCAGAAGCTCCTCCTGGAGTAGAAACAGATCTCATTGATGTTGGATTCACAGATGATGTGAAG
AAAGGTGGCCCTGGAAGAGGAGGAGGTGGTGGTGGGTTCACAGCACCTGTTGGTGGAACTGATG
GAACAGTGCCAATGCCTATGCCTATGCCTATGCCCATGCCATCTCCAAATCCTCCCTTCTCATA
TCCACTGCCTAAGGGACCATCGGATTTCAATGGCTTGCCAGTGGGGACTTATCAGGCCTTTCCC
AATATTAATCCACCTCAGATACCAGCAACTCCCCCATCATATGAATCTGTTGATGACATTAATG
CTGATAAGAATATTTCTTCTGCACAGATAATTGGACCTGGACCCAAGCAGGAAGCCTCTGCAAA
GCCCCCTTCTAGACCTATGGATAACTATGACAACTTTGTACTGCCAGAGTTACCATCTGTGCCA
GACACACTGCCAACTTCATCTGCTGGTGCCAGCAACTCAGCTTCTGAAGACATTGACTTTGATG
ATCTTTCCCGGAGATTTGAAGAACTAAAAAAGAAGACATAGGTCTCTTAAATCAGGCAACCTCC
ACGTTCTGGAAGTTGAGACTGAGTAGTTTCTCCTTGTAACAAAGAATCTCCATGAAATTCCGTT
TCATCTATTAACCATCACTGAGCGTGACACTCTTCCTTGGGGCTCTCTTCCTGCTCTACCAAAT
TCTGTTGCTTTCCAGTTCTCTATTGAGACTAAGACACTAACAACTGGAGACTGAGGCCAGAACC
CTGGCTCCTGGCAGTTGTGCCTGTTTCCTGACAGAGAGATCCCAGGTTTTCTCCCACAATCCTT
CCCCAGGAGAATGAGAAGATGAAGCATTGTGAGGAGAGCCACTGGAGATGGCTGGACTGTGGAG
GAGAGCTCCTCATGAAGTGTCTCAGCCGTCAGTTGTGGTTCCAGACTTGGAAACACTTCCCTCT
GTACAGAGGGATTGTGCTGAGAATCAAAGCCACTGTGTGTTTTCTCACTCTCTCATAAGTAGGA
GAGAGAGAAAGTGGCTCAGGAAGCCATGGTAATGGTTCTTGGAAGCTGGGCTCTTTCCTTGGCA
TGTACACTACTCCTTGCTGCAGGGCACTGTTCCACCTGGATCCAGTTGCAAAGTGGATTTCAAA
AAAGTTGAAGGCCTCTCTTAGTTCTACTGGATTCTCAGGGAGCCCTCTGTGGCCTTTTACTTTA
TTTTGAGTGCTGTTTCCCCCTTTTTACCAGAGAACAGCACTGTAGAATTTTGTTTTTGCCCATA
GCATGTTAATAGCAGAGGGAGGACAGGTCACATATTGGGCAGAAGTTGCTGTTCAAGCCTAGGG
TGGGCTTCCAGCTGCCTTAATAGAAATACTCAAGTCTCTTGGGTAGTGAGCTGGAAGGCCTACA
GGAGAAGAGGGGAACCTGTTTTCATTTGAAAACTTTATGATTAAGGGAATCTTTAAAAACTGAT
TTCATATTTTTAGTGCCCATGTGACTATATTTCACTGCTTTTCTGGGTGGATCAGACTTGTTTA
TTGTAACTTATGTGCTCCTTTGTCCCCTAAGGTCATCCTTCCACACAGGGTTGGCTTTGAGATT
AAAGATAGGATTTTTGCTTCTGTGTAGCACAGCTGTACATAACCTGTTTCAAGCAACTTTCTTC
AATGTTATTGATTTGTATTTCATAGCTTGGTAGTTGCTAATAAAATTAGAAGATCCTGTGTC

hide sequence

RefSeq Acc Id:

XM_040279145 ⟹ XP_040135079

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	37,680,867 - 37,699,103 (+)	NCBI

RefSeq Acc Id:

XM_040279146 ⟹ XP_040135080

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	37,680,869 - 37,699,103 (+)	NCBI

RefSeq Acc Id:

XM_040279147 ⟹ XP_040135081

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	37,680,804 - 37,699,103 (+)	NCBI

RefSeq Acc Id:

XM_040279148 ⟹ XP_040135082

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	37,685,399 - 37,699,103 (+)	NCBI

RefSeq Acc Id:

XM_040279149 ⟹ XP_040135083

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	37,680,866 - 37,699,103 (+)	NCBI

RefSeq Acc Id:

XM_040279150 ⟹ XP_040135084

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	37,680,865 - 37,699,103 (+)	NCBI

RefSeq Acc Id:

XM_040279151 ⟹ XP_040135085

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	37,680,866 - 37,699,103 (+)	NCBI

RefSeq Acc Id:

XM_040279152 ⟹ XP_040135086

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	37,687,210 - 37,699,103 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005318445	(Get FASTA)	NCBI Sequence Viewer
	XP_013221840	(Get FASTA)	NCBI Sequence Viewer
	XP_021577388	(Get FASTA)	NCBI Sequence Viewer
	XP_040135079	(Get FASTA)	NCBI Sequence Viewer
	XP_040135080	(Get FASTA)	NCBI Sequence Viewer
	XP_040135081	(Get FASTA)	NCBI Sequence Viewer
	XP_040135082	(Get FASTA)	NCBI Sequence Viewer
	XP_040135083	(Get FASTA)	NCBI Sequence Viewer
	XP_040135084	(Get FASTA)	NCBI Sequence Viewer
	XP_040135085	(Get FASTA)	NCBI Sequence Viewer
	XP_040135086	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000000917.3
GenBank Protein	KAG3256917	(Get FASTA)	NCBI Sequence Viewer
	KAG3256918	(Get FASTA)	NCBI Sequence Viewer
	KAG3256919	(Get FASTA)	NCBI Sequence Viewer
	KAG3256920	(Get FASTA)	NCBI Sequence Viewer
	KAG3256921	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005318445 ⟸ XM_005318388
- Peptide Label:	isoform X5
- UniProtKB:	I3LXT8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDY LVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKY SKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPDSVVMAEAPPGVE TDLIDVGFTDDVKKGGPGRGGGGGGFTAPVGGTDGTVPMPMPMPMPMPSPNPPFSYPLPKGPSD FNGLPVGTYQAFPNINPPQIPATPPSYESVDDINADKNISSAQIIGPGPKQEASAKPPSRPMDN YDNFVLPELPSVPDTLPTSSAGASNSASEDIDFDDLSRRFEELKKKT hide sequence

RefSeq Acc Id:

XP_013221840 ⟸ XM_013366386

- Peptide Label:

isoform X8

- Sequence:

show sequence

MEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSKEY
GKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPDSVVMAEAPPGVETDLI
DVGFTDDVKKGGPGRGGGGGGFTAPVGGTDGTVPMPMPMPMPMPSPNPPFSYPLPKGPSDFNGL
PVGTYQAFPNINPPQIPATPPSYESVDDINADKNISSAQIIGPGPKQEASAKPPSRPMDNYDNF
VLPELPSVPDTLPTSSAGASNSASEDIDFDDLSRRFEELKKKT

hide sequence

RefSeq Acc Id:	XP_021577388 ⟸ XM_021721713
- Peptide Label:	isoform X5
- UniProtKB:	I3LXT8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDY LVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKY SKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPDSVVMAEAPPGVE TDLIDVGFTDDVKKGGPGRGGGGGGFTAPVGGTDGTVPMPMPMPMPMPSPNPPFSYPLPKGPSD FNGLPVGTYQAFPNINPPQIPATPPSYESVDDINADKNISSAQIIGPGPKQEASAKPPSRPMDN YDNFVLPELPSVPDTLPTSSAGASNSASEDIDFDDLSRRFEELKKKT hide sequence

RefSeq Acc Id:	XP_040135081 ⟸ XM_040279147
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040135084 ⟸ XM_040279150
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_040135083 ⟸ XM_040279149
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_040135085 ⟸ XM_040279151
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_040135079 ⟸ XM_040279145
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040135080 ⟸ XM_040279146
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040135082 ⟸ XM_040279148
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040135086 ⟸ XM_040279152
- Peptide Label:	isoform X8

RefSeq Acc Id:

ENSSTOP00000000917 ⟸ ENSSTOT00000001022

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000001021	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000001022.3	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1260.60	UniProtKB/TrEMBL
InterPro	Ist1	UniProtKB/TrEMBL
	IST1-like	UniProtKB/TrEMBL
NCBI Gene	Ist1	ENTREZGENE
PANTHER	IST1 HOMOLOG	UniProtKB/TrEMBL
	PTHR12161	UniProtKB/TrEMBL
Pfam	Ist1	UniProtKB/TrEMBL
UniProt	I3LXT8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-26	LOC101977053	IST1 factor associated with ESCRT-III	Ist1	IST1 factor associated with ESCRT-III	Symbol and/or name change	5135510	APPROVED
2019-02-05	Ist1	IST1 factor associated with ESCRT-III		IST1, ESCRT-III associated factor	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar