LOC101965888 (patr class I histocompatibility antigen, A-2 alpha chain-like) - Rat Genome Database

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Pathways
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Gene: LOC101965888 (patr class I histocompatibility antigen, A-2 alpha chain-like) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101965888
Name: patr class I histocompatibility antigen, A-2 alpha chain-like
RGD ID: 12502079
Description: ENCODES a protein that exhibits peptide antigen binding (inferred); signaling receptor binding (inferred); INVOLVED IN antigen processing and presentation (inferred); antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent (inferred); antigen processing and presentation of endogenous peptide antigen via MHC class Ib (inferred); FOUND IN external side of plasma membrane (inferred); extracellular space (inferred); lumenal side of endoplasmic reticulum membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: HLA class I histocompatibility antigen, alpha chain G-like; patr class I histocompatibility antigen, A-2 alpha chain-like, transcript variant X1; patr class I histocompatibility antigen, A-2 alpha chain-like, transcript variant X2; patr class I histocompatibility antigen, A-2 alpha chain-like, transcript variant X3
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494633,446,778 - 33,450,570 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936723140,555 - 144,886 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005338810   ⟹   XP_005338867
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494633,446,988 - 33,450,570 (+)NCBI
SpeTri2.0NW_004936723140,555 - 144,886 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021735597   ⟹   XP_021591272
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494633,447,069 - 33,450,570 (+)NCBI
SpeTri2.0NW_004936723140,555 - 144,886 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040282266   ⟹   XP_040138200
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494633,446,778 - 33,450,570 (+)NCBI
RefSeq Acc Id: XM_040282267   ⟹   XP_040138201
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494633,446,778 - 33,450,570 (+)NCBI
RefSeq Acc Id: XM_040282268   ⟹   XP_040138202
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494633,446,778 - 33,450,570 (+)NCBI
RefSeq Acc Id: XM_040282269   ⟹   XP_040138203
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494633,446,988 - 33,450,570 (+)NCBI
RefSeq Acc Id: XM_040282270   ⟹   XP_040138204
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494633,447,069 - 33,450,570 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005338867   ⟸   XM_005338810
- Peptide Label: isoform X4
- UniProtKB: I3NAC6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021591272   ⟸   XM_021735597
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_040138200   ⟸   XM_040282266
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040138201   ⟸   XM_040282267
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040138202   ⟸   XM_040282268
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040138203   ⟸   XM_040282269
- Peptide Label: isoform X6
RefSeq Acc Id: XP_040138204   ⟸   XM_040282270
- Peptide Label: isoform X7
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000023150 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000027310.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.30.500.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  MHC_I-like_Ag-recog UniProtKB/TrEMBL
  MHC_I-like_Ag-recog_sf UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  MHC_I_a_a1/a2 UniProtKB/TrEMBL
  MHC_I_a_C UniProtKB/TrEMBL
NCBI Gene LOC101965888 ENTREZGENE
PANTHER CLASS IB MHC ANTIGEN QA-2-RELATED UniProtKB/TrEMBL
  MHC CLASS I-RELATED UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  MHC_I UniProtKB/TrEMBL
  MHC_I_C UniProtKB/TrEMBL
PRINTS MHCCLASSI UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF54452 UniProtKB/TrEMBL
UniProt I3NAC6 ENTREZGENE, UniProtKB/TrEMBL