Dpyd (dihydropyrimidine dehydrogenase) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Dpyd (dihydropyrimidine dehydrogenase) Ictidomys tridecemlineatus
Analyze
Symbol: Dpyd
Name: dihydropyrimidine dehydrogenase
RGD ID: 12502002
Description: ENCODES a protein that exhibits dihydropyrimidine dehydrogenase (NADP+) activity (ortholog); dihydrouracil dehydrogenase (NAD+) activity (ortholog); FAD binding (ortholog); INVOLVED IN aging (ortholog); circadian rhythm (ortholog); CMP catabolic process (ortholog); PARTICIPATES IN beta-alanine metabolic pathway; beta-ureidopropionase deficiency pathway; carnosinemia pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: dihydropyrimidine dehydrogenase [NADP(+)]
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365371,660,461 - 2,439,305 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Dpyd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365371,660,461 - 2,439,305 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DPYD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl197,077,743 - 97,995,000 (-)EnsemblGRCh38hg38GRCh38
GRCh38197,077,743 - 97,921,059 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37197,543,299 - 98,386,615 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36197,315,887 - 98,159,203 (-)NCBINCBI36hg18NCBI36
Build 34197,255,322 - 98,098,600NCBI
Celera195,797,301 - 96,640,303 (-)NCBI
Cytogenetic Map1p21.3NCBI
HuRef195,664,181 - 96,508,076 (-)NCBIHuRef
CHM1_1197,659,318 - 98,502,216 (-)NCBICHM1_1
Dpyd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393118,355,758 - 119,226,573 (+)NCBIGRCm39mm39
GRCm383118,562,109 - 119,432,924 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3118,562,129 - 119,432,924 (+)EnsemblGRCm38mm10GRCm38
MGSCv373118,265,096 - 119,135,836 (+)NCBIGRCm37mm9NCBIm37
MGSCv363118,554,182 - 119,424,922 (+)NCBImm8
Celera3124,970,410 - 125,843,833 (+)NCBICelera
Cytogenetic Map3G1NCBI
Dpyd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22206,609,043 - 207,474,982 (+)NCBI
Rnor_6.0 Ensembl2221,823,687 - 222,694,627 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02221,823,692 - 222,694,627 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02239,874,415 - 240,000,215 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02240,072,322 - 240,744,042 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42214,931,901 - 215,818,809 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12214,894,962 - 215,781,871 (+)NCBI
Celera2199,080,477 - 199,932,183 (+)NCBICelera
Cytogenetic Map2q41NCBI
Dpyd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554352,007,185 - 2,766,138 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554352,007,185 - 2,800,907 (-)NCBIChiLan1.0ChiLan1.0
DPYD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1198,457,934 - 99,300,094 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl198,457,934 - 99,300,100 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0199,736,145 - 100,576,663 (-)NCBIMhudiblu_PPA_v0panPan3
DPYD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl651,814,573 - 52,580,923 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1651,789,786 - 52,564,802 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
DPYD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4119,931,458 - 120,712,462 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14119,931,471 - 120,712,461 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24131,845,556 - 132,550,018 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DPYD
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12035,376,738 - 36,215,388 (+)NCBI
ChlSab1.1 Ensembl2035,377,266 - 36,215,679 (+)Ensembl


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021728041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGTP01050065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01050090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021728041   ⟹   XP_021583716
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365371,660,461 - 2,439,305 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021583716 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_021583716   ⟸   XM_021728041
- Sequence:
Protein Domains
4Fe-4S ferredoxin-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008412 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000007560 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008435 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.10.1060.10 UniProtKB/TrEMBL
  3.20.20.70 UniProtKB/TrEMBL
  3.50.50.60 UniProtKB/TrEMBL
InterPro 4Fe4S_Fe-S-bd UniProtKB/TrEMBL
  4Fe4S_Fe_S_CS UniProtKB/TrEMBL
  Aldolase_TIM UniProtKB/TrEMBL
  Dihydroorotate_DH UniProtKB/TrEMBL
  DPD_II UniProtKB/TrEMBL
  FAD/NAD-bd_sf UniProtKB/TrEMBL
  FAD/NAD-binding_dom UniProtKB/TrEMBL
  Helical_ferredxn UniProtKB/TrEMBL
NCBI Gene Dpyd ENTREZGENE
Pfam DHO_dh UniProtKB/TrEMBL
  Fer4_20 UniProtKB/TrEMBL
  Pyr_redox_2 UniProtKB/TrEMBL
PROSITE 4FE4S_FER_1 UniProtKB/TrEMBL
  4FE4S_FER_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF46548 UniProtKB/TrEMBL
TIGRFAMs pyrD_sub1_fam UniProtKB/TrEMBL
UniProt I3MBM4_ICTTR UniProtKB/TrEMBL