Slc5a6 (solute carrier family 5 member 6) - Rat Genome Database

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Gene: Slc5a6 (solute carrier family 5 member 6) Ictidomys tridecemlineatus
Analyze
Symbol: Slc5a6
Name: solute carrier family 5 member 6
RGD ID: 12501443
Description: ENCODES a protein that exhibits sodium-dependent multivitamin transmembrane transporter activity (ortholog); INVOLVED IN biotin transport (ortholog); pantothenate transmembrane transport (ortholog); ASSOCIATED WITH NEURODEGENERATION, INFANTILE-ONSET, BIOTIN-RESPONSIVE (ortholog); short-rib thoracic dysplasia 10 with or without polydactyly (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sodium-dependent multivitamin transporter; solute carrier family 5 member 6, transcript variant X1; solute carrier family 5 member 6, transcript variant X10; solute carrier family 5 member 6, transcript variant X11; solute carrier family 5 member 6, transcript variant X12; solute carrier family 5 member 6, transcript variant X13; solute carrier family 5 member 6, transcript variant X14; solute carrier family 5 member 6, transcript variant X15; solute carrier family 5 member 6, transcript variant X16; solute carrier family 5 member 6, transcript variant X2; solute carrier family 5 member 6, transcript variant X3; solute carrier family 5 member 6, transcript variant X4; solute carrier family 5 member 6, transcript variant X5; solute carrier family 5 member 6, transcript variant X6; solute carrier family 5 member 6, transcript variant X7; solute carrier family 5 member 6, transcript variant X8; solute carrier family 5 member 6, transcript variant X9
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,489,807 - 65,506,815 (-)NCBI
SpeTri2.0NW_0049364935,338,119 - 5,349,758 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Slc5a6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,489,807 - 65,506,815 (-)NCBI
SpeTri2.0NW_0049364935,338,119 - 5,349,758 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC5A6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38227,199,587 - 27,212,787 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl227,199,587 - 27,212,958 (-)EnsemblGRCh38hg38GRCh38
GRCh37227,422,455 - 27,435,136 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36227,275,962 - 27,288,575 (-)NCBINCBI36hg18NCBI36
Build 34227,334,109 - 27,346,722NCBI
Celera227,268,776 - 27,281,501 (-)NCBI
Cytogenetic Map2p23.3NCBI
HuRef227,164,164 - 27,176,880 (-)NCBIHuRef
CHM1_1227,352,374 - 27,365,079 (-)NCBICHM1_1
Slc5a6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39531,193,380 - 31,206,268 (-)NCBIGRCm39mm39
GRCm39 Ensembl531,193,380 - 31,206,268 (-)Ensembl
GRCm38531,036,036 - 31,048,924 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl531,036,036 - 31,048,924 (-)EnsemblGRCm38mm10GRCm38
MGSCv37531,338,409 - 31,351,297 (-)NCBIGRCm37mm9NCBIm37
MGSCv36531,312,617 - 31,324,830 (-)NCBImm8
Celera528,507,988 - 28,520,955 (-)NCBICelera
Cytogenetic Map5B1NCBI
Slc5a6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2625,319,187 - 25,331,713 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl625,320,442 - 25,331,712 (+)Ensembl
Rnor_6.0626,685,823 - 26,697,110 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl626,686,033 - 26,697,116 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0636,499,460 - 36,512,085 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,301,630 - 25,312,901 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1625,304,582 - 25,315,853 (+)NCBI
Celera624,811,307 - 24,822,588 (+)NCBICelera
Cytogenetic Map6q14NCBI
SLC5A6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A27,288,726 - 27,302,128 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A27,288,726 - 27,301,896 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A27,199,422 - 27,213,650 (-)NCBIMhudiblu_PPA_v0panPan3
SLC5A6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11721,181,916 - 21,194,301 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1721,031,765 - 21,193,112 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1721,073,728 - 21,086,105 (-)NCBI
ROS_Cfam_1.01721,502,873 - 21,515,270 (-)NCBI
ROS_Cfam_1.0 Ensembl1721,351,935 - 21,515,309 (-)Ensembl
UMICH_Zoey_3.11721,189,666 - 21,202,032 (-)NCBI
UNSW_CanFamBas_1.01721,200,734 - 21,213,100 (-)NCBI
UU_Cfam_GSD_1.01721,247,616 - 21,259,983 (-)NCBI
SLC5A6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3111,920,176 - 111,976,474 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13111,919,298 - 111,930,944 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23118,917,508 - 118,929,193 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103220608
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11480,406,221 - 80,415,730 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1480,407,561 - 80,416,848 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604531,738,413 - 31,751,070 (-)NCBIVero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013357375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013357379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040271489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040271490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010001352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013357375   ⟹   XP_013212829
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629265,489,807 - 65,501,118 (-)NCBI
SpeTri2.0NW_0049364935,338,201 - 5,349,758 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724583   ⟹   XP_021580258
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629265,489,807 - 65,501,118 (-)NCBI
SpeTri2.0NW_0049364935,338,198 - 5,349,758 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724584   ⟹   XP_021580259
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629265,489,807 - 65,501,118 (-)NCBI
SpeTri2.0NW_0049364935,338,196 - 5,348,905 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724585   ⟹   XP_021580260
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629265,489,807 - 65,500,935 (-)NCBI
SpeTri2.0NW_0049364935,338,649 - 5,349,758 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724586   ⟹   XP_021580261
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629265,489,807 - 65,501,128 (-)NCBI
SpeTri2.0NW_0049364935,338,513 - 5,349,758 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724587   ⟹   XP_021580262
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629265,489,807 - 65,500,858 (-)NCBI
SpeTri2.0NW_0049364935,338,740 - 5,349,758 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724588   ⟹   XP_021580263
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629265,489,807 - 65,501,526 (-)NCBI
SpeTri2.0NW_0049364935,338,119 - 5,349,758 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724589   ⟹   XP_021580264
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629265,489,807 - 65,501,063 (-)NCBI
SpeTri2.0NW_0049364935,338,198 - 5,349,758 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724590   ⟹   XP_021580265
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629265,489,807 - 65,500,916 (-)NCBI
SpeTri2.0NW_0049364935,338,641 - 5,349,758 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724591   ⟹   XP_021580266
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629265,489,807 - 65,500,817 (-)NCBI
SpeTri2.0NW_0049364935,338,748 - 5,349,758 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724592   ⟹   XP_021580267
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629265,489,807 - 65,501,525 (-)NCBI
SpeTri2.0NW_0049364935,338,155 - 5,349,758 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724596   ⟹   XP_021580271
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629265,489,807 - 65,501,519 (-)NCBI
SpeTri2.0NW_0049364935,338,156 - 5,349,758 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040271489   ⟹   XP_040127423
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629265,489,807 - 65,506,815 (-)NCBI
RefSeq Acc Id: XM_040271490   ⟹   XP_040127424
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629265,489,807 - 65,501,128 (-)NCBI
Protein Sequences
Protein RefSeqs XP_013212829 (Get FASTA)   NCBI Sequence Viewer  
  XP_021580258 (Get FASTA)   NCBI Sequence Viewer  
  XP_021580259 (Get FASTA)   NCBI Sequence Viewer  
  XP_021580260 (Get FASTA)   NCBI Sequence Viewer  
  XP_021580261 (Get FASTA)   NCBI Sequence Viewer  
  XP_021580262 (Get FASTA)   NCBI Sequence Viewer  
  XP_021580263 (Get FASTA)   NCBI Sequence Viewer  
  XP_021580264 (Get FASTA)   NCBI Sequence Viewer  
  XP_021580265 (Get FASTA)   NCBI Sequence Viewer  
  XP_021580266 (Get FASTA)   NCBI Sequence Viewer  
  XP_021580267 (Get FASTA)   NCBI Sequence Viewer  
  XP_021580271 (Get FASTA)   NCBI Sequence Viewer  
  XP_040127423 (Get FASTA)   NCBI Sequence Viewer  
  XP_040127424 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3267767 (Get FASTA)   NCBI Sequence Viewer  
  KAG3267768 (Get FASTA)   NCBI Sequence Viewer  
  KAG3267769 (Get FASTA)   NCBI Sequence Viewer  
  KAG3267770 (Get FASTA)   NCBI Sequence Viewer  
  KAG3267771 (Get FASTA)   NCBI Sequence Viewer  
  KAG3267772 (Get FASTA)   NCBI Sequence Viewer  
  KAG3267773 (Get FASTA)   NCBI Sequence Viewer  
  KAG3267774 (Get FASTA)   NCBI Sequence Viewer  
  KAG3267775 (Get FASTA)   NCBI Sequence Viewer  
  KAG3267776 (Get FASTA)   NCBI Sequence Viewer  
  KAG3267777 (Get FASTA)   NCBI Sequence Viewer  
  KAG3267778 (Get FASTA)   NCBI Sequence Viewer  
  KAG3267779 (Get FASTA)   NCBI Sequence Viewer  
  KAG3267780 (Get FASTA)   NCBI Sequence Viewer  
  KAG3267781 (Get FASTA)   NCBI Sequence Viewer  
  KAG3267782 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013212829   ⟸   XM_013357375
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021580263   ⟸   XM_021724588
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021580267   ⟸   XM_021724592
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021580271   ⟸   XM_021724596
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021580259   ⟸   XM_021724584
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_021580258   ⟸   XM_021724583
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021580264   ⟸   XM_021724589
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021580261   ⟸   XM_021724586
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021580265   ⟸   XM_021724590
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021580260   ⟸   XM_021724585
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021580262   ⟸   XM_021724587
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021580266   ⟸   XM_021724591
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_040127423   ⟸   XM_040271489
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040127424   ⟸   XM_040271490
- Peptide Label: isoform X5


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011299 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000010140 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011302 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1730.10 UniProtKB/TrEMBL
InterPro Na/Glc_symporter_sf UniProtKB/TrEMBL
  Na/solute_symporter UniProtKB/TrEMBL
  Na/solute_symporter_CS UniProtKB/TrEMBL
NCBI Gene Slc5a6 ENTREZGENE
Pfam SSF UniProtKB/TrEMBL
PROSITE NA_SOLUT_SYMP_1 UniProtKB/TrEMBL
  NA_SOLUT_SYMP_3 UniProtKB/TrEMBL
TIGRFAMs sss UniProtKB/TrEMBL
UniProt I3MH22_ICTTR UniProtKB/TrEMBL