LOC101955324 (fukutin related protein) - Rat Genome Database

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Gene: LOC101955324 (fukutin related protein) Ictidomys tridecemlineatus
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Symbol: LOC101955324
Name: fukutin related protein
RGD ID: 12500996
Description: ENCODES a protein that exhibits dystroglycan binding (ortholog); identical protein binding (ortholog); INVOLVED IN glycoprotein biosynthetic process (ortholog); protein O-linked mannosylation (ortholog); protein processing (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2I (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2K (ortholog); FOUND IN cytosol (ortholog); extracellular space (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: Fkrp
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934918,958,974 - 18,968,719 (+)NCBI
SpeTri2.0NW_004936664577,109 - 586,848 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC101955324
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934918,958,974 - 18,968,719 (+)NCBI
SpeTri2.0NW_004936664577,109 - 586,848 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FKRP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1946,746,046 - 46,776,988 (+)EnsemblGRCh38hg38GRCh38
GRCh381946,746,015 - 46,758,575 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371947,249,314 - 47,261,832 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361951,941,143 - 51,953,582 (+)NCBINCBI36hg18NCBI36
Build 341951,941,154 - 51,953,581NCBI
Celera1944,052,833 - 44,066,103 (+)NCBI
Cytogenetic Map19q13.32NCBI
HuRef1943,674,242 - 43,686,703 (+)NCBIHuRef
CHM1_11947,251,200 - 47,263,719 (+)NCBICHM1_1
Fkrp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39716,543,192 - 16,550,657 (-)NCBIGRCm39mm39
GRCm39 Ensembl716,543,171 - 16,550,657 (-)Ensembl
GRCm38716,809,267 - 16,816,732 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl716,809,246 - 16,816,732 (-)EnsemblGRCm38mm10GRCm38
MGSCv37717,394,616 - 17,402,081 (-)NCBIGRCm37mm9NCBIm37
MGSCv36715,967,789 - 15,975,237 (-)NCBImm8
Celera714,007,271 - 14,014,735 (-)NCBICelera
Cytogenetic Map7A2NCBI
Fkrp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2177,479,641 - 77,486,954 (-)NCBI
Rnor_6.0 Ensembl178,733,508 - 78,739,107 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0178,733,461 - 78,740,803 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0179,980,656 - 79,987,961 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4177,133,884 - 77,139,485 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1177,211,994 - 77,217,596 (-)NCBI
Celera171,964,734 - 71,970,335 (-)NCBICelera
Cytogenetic Map1q21NCBI
Fkrp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955574786,758 - 788,348 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955574779,672 - 789,621 (+)NCBIChiLan1.0ChiLan1.0
FKRP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11952,268,889 - 52,277,888 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1952,273,546 - 52,276,341 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01943,738,339 - 43,748,250 (+)NCBIMhudiblu_PPA_v0panPan3
FKRP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11109,166,527 - 109,177,393 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1109,168,644 - 109,178,319 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1108,646,333 - 108,657,154 (-)NCBI
ROS_Cfam_1.01109,692,868 - 109,703,829 (-)NCBI
UMICH_Zoey_3.11109,370,001 - 109,380,952 (-)NCBI
UNSW_CanFamBas_1.01109,004,334 - 109,015,149 (-)NCBI
UU_Cfam_GSD_1.01109,872,874 - 109,883,835 (-)NCBI
FKRP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,627,482 - 52,639,255 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,627,466 - 52,639,255 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,948,142 - 47,957,965 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103234922
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1640,100,399 - 40,128,340 (+)NCBI
ChlSab1.1 Ensembl640,126,321 - 40,127,808 (+)Ensembl
Fkrp
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248326,849,001 - 6,858,931 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005336569   ⟹   XP_005336626
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934918,958,974 - 18,968,719 (+)NCBI
SpeTri2.0NW_004936664577,109 - 586,848 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040279257   ⟹   XP_040135191
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934918,958,974 - 18,968,719 (+)NCBI
RefSeq Acc Id: XM_040279258   ⟹   XP_040135192
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934918,958,974 - 18,968,719 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005336626 (Get FASTA)   NCBI Sequence Viewer  
  XP_040135191 (Get FASTA)   NCBI Sequence Viewer  
  XP_040135192 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005336626   ⟸   XM_005336569
- UniProtKB: I3NCM5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040135191   ⟸   XM_040279257
RefSeq Acc Id: XP_040135192   ⟸   XM_040279258


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027896 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000022122 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000025716 UniProtKB/TrEMBL
InterPro LicD_fam UniProtKB/TrEMBL
NCBI Gene Fkrp ENTREZGENE
Pfam LicD UniProtKB/TrEMBL
UniProt I3NCM5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101955324  fukutin related protein  Fkrp  fukutin related protein  Symbol and/or name change 5135510 APPROVED