LOC101977071 (sialin) - Rat Genome Database

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Pathways
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Gene: LOC101977071 (sialin) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101977071
Name: sialin
RGD ID: 12500133
Description: ENCODES a protein that exhibits D-glucuronate transmembrane transporter activity (ortholog); sialic acid transmembrane transporter activity (ortholog); INVOLVED IN neurotransmitter loading into synaptic vesicle (ortholog); response to bacterium (ortholog); sialic acid transport (ortholog); PARTICIPATES IN amino sugar metabolic pathway; french type sialuria pathway; sialic acid storage disease pathway; ASSOCIATED WITH focal segmental glomerulosclerosis (ortholog); focal segmental glomerulosclerosis 1 (ortholog); Free Sialic Acid Storage Disease (ortholog); FOUND IN cytoplasmic vesicle (ortholog); cytosol (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Slc17a5; solute carrier family 17 member 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494670,926,024 - 70,941,358 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936859668,900 - 684,207 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101977071
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494670,926,024 - 70,941,358 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936859668,900 - 684,207 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC17A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38673,593,379 - 73,653,992 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl673,593,379 - 73,653,992 (-)EnsemblGRCh38hg38GRCh38
GRCh37674,303,102 - 74,363,715 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36674,359,823 - 74,420,417 (-)NCBINCBI36Build 36hg18NCBI36
Build 34674,359,823 - 74,420,411NCBI
Celera674,698,011 - 74,758,950 (-)NCBICelera
Cytogenetic Map6q13ENTREZGENE
HuRef671,502,886 - 71,563,295 (-)NCBIHuRef
CHM1_1674,469,444 - 74,529,997 (-)NCBICHM1_1
T2T-CHM13v2.0674,770,746 - 74,832,087 (-)NCBIT2T-CHM13v2.0
Slc17a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39978,443,769 - 78,495,346 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl978,443,770 - 78,495,323 (-)EnsemblGRCm39 Ensembl
GRCm38978,536,487 - 78,588,045 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl978,536,488 - 78,588,041 (-)EnsemblGRCm38mm10GRCm38
MGSCv37978,384,316 - 78,435,834 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36979,300,217 - 79,352,237 (-)NCBIMGSCv36mm8
MGSCv36978,322,193 - 78,373,711 (-)NCBIMGSCv36mm8
Celera975,715,413 - 75,754,082 (-)NCBICelera
Cytogenetic Map9E1NCBI
cM Map943.65NCBI
Slc17a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8888,274,497 - 88,309,734 (-)NCBIGRCr8
mRatBN7.2879,394,416 - 79,429,387 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx884,924,240 - 84,959,248 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0883,201,391 - 83,236,397 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0881,024,070 - 81,059,076 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0885,891,245 - 85,926,466 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl885,891,257 - 85,926,450 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0885,440,739 - 85,475,700 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4883,516,448 - 83,551,409 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1883,536,016 - 83,570,972 (-)NCBI
Celera879,140,301 - 79,175,337 (-)NCBICelera
Cytogenetic Map8q31NCBI
Slc17a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554938,693,679 - 8,719,250 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554938,693,933 - 8,719,250 (-)NCBIChiLan1.0ChiLan1.0
SLC17A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2593,599,395 - 93,687,106 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1691,474,219 - 91,556,370 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0671,404,354 - 71,477,511 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1674,702,438 - 74,760,557 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl674,702,447 - 74,760,557 (-)Ensemblpanpan1.1panPan2
SLC17A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11235,648,349 - 35,683,115 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1235,649,376 - 35,683,534 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1235,519,601 - 35,554,433 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01236,205,167 - 36,239,946 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1236,205,170 - 36,240,367 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11235,744,104 - 35,778,866 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01235,765,409 - 35,800,192 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01235,890,179 - 35,924,958 (-)NCBIUU_Cfam_GSD_1.0
SLC17A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl192,286,841 - 92,342,776 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1192,286,821 - 92,342,788 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21103,338,170 - 103,394,107 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC17A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1171,499,110 - 1,558,954 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl171,499,651 - 1,558,951 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660587,403,356 - 7,463,091 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc17a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624819767,340 - 815,903 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624819766,332 - 816,255 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021720806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021720806   ⟹   XP_021576481
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494670,926,024 - 70,941,358 (-)NCBI
SpeTri2.0NW_004936859668,900 - 684,207 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021576481 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3289799 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021576481   ⟸   XM_021720806
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Slc17a5 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-13 LOC101977071  sialin  Slc17a5  solute carrier family 17 member 5  Symbol and/or name change 5135510 APPROVED