CUNH21orf58 (chromosome unknown C21orf58 homolog) - Rat Genome Database

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Gene: CUNH21orf58 (chromosome unknown C21orf58 homolog) Ictidomys tridecemlineatus
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Symbol: CUNH21orf58
Name: chromosome unknown C21orf58 homolog
RGD ID: 12499921
Description: ASSOCIATED WITH autistic disorder (ortholog); Axenfeld-Rieger syndrome type 3 (ortholog); cataract 9 multiple types (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown open reading frame, human C21orf58; LOC101968200; uncharacterized protein C21orf58 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497138,866,114 - 38,877,736 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936778252,866 - 264,677 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
CUNH21orf58
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497138,866,114 - 38,877,736 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936778252,866 - 264,677 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C21orf58
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382146,300,430 - 46,323,870 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2146,300,181 - 46,323,875 (-)EnsemblGRCh38hg38GRCh38
GRCh372147,720,344 - 47,743,784 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362146,545,475 - 46,568,213 (-)NCBINCBI36Build 36hg18NCBI36
Build 342146,545,474 - 46,568,213NCBI
Celera2132,834,819 - 32,857,559 (-)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2133,104,411 - 33,126,619 (-)NCBIHuRef
CHM1_12147,281,792 - 47,304,522 (-)NCBICHM1_1
T2T-CHM13v2.02144,685,809 - 44,709,216 (-)NCBIT2T-CHM13v2.0
2610028H24Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391076,284,883 - 76,297,052 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1076,284,915 - 76,296,944 (+)EnsemblGRCm39 Ensembl
GRCm381076,449,049 - 76,461,218 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1076,449,081 - 76,461,110 (+)EnsemblGRCm38mm10GRCm38
MGSCv371075,911,826 - 75,923,963 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361075,892,860 - 75,904,821 (+)NCBIMGSCv36mm8
Celera1077,493,470 - 77,505,607 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1038.84NCBI
C20h21orf58
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82012,165,853 - 12,187,271 (-)NCBIGRCr8
mRatBN7.22012,167,279 - 12,188,665 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2012,175,442 - 12,187,017 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2012,870,964 - 12,882,529 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02012,231,887 - 12,243,458 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02012,703,666 - 12,715,231 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02012,927,310 - 12,938,891 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2012,927,320 - 12,938,891 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02015,085,285 - 15,096,866 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42012,591,067 - 12,602,648 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2013,673,278 - 13,684,859 (-)NCBICelera
Cytogenetic Map20p12NCBI
CUNH21orf58
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540742,712,152 - 42,728,690 (-)NCBIChiLan1.0ChiLan1.0
C22H21orf58
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22242,397,567 - 42,421,611 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12137,270,598 - 37,295,168 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02132,641,582 - 32,665,117 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12145,892,145 - 45,914,445 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2145,892,145 - 45,914,445 (-)Ensemblpanpan1.1panPan2
C31H21orf58
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13139,567,515 - 39,576,238 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3139,567,614 - 39,574,285 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3138,793,270 - 38,804,879 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03139,206,700 - 39,218,311 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13139,068,308 - 39,079,918 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03139,031,474 - 39,037,639 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03139,547,127 - 39,558,737 (-)NCBIUU_Cfam_GSD_1.0
CUNH21orf58
(Sus scrofa - pig)		 No map positions available.
CUNH21orf58
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1289,916,904 - 89,934,889 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605418,304,431 - 18,328,329 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH21orf58
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474531,383,509 - 31,399,877 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_040287164   ⟹   XP_040143098
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440497138,866,114 - 38,877,736 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040143098 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000025782.1
GenBank Protein KAG3284182 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040143098   ⟸   XM_040287164
- UniProtKB: A0A287CWV1 (UniProtKB/TrEMBL)
Protein Domains
DUF4587


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000031143 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000042350.1 UniProtKB/TrEMBL
InterPro DUF4587 UniProtKB/TrEMBL
  PRR29-like UniProtKB/TrEMBL
NCBI Gene LOC101968200 ENTREZGENE
PANTHER PTHR28604 UniProtKB/TrEMBL
  RIKEN CDNA 2610028H24 GENE UniProtKB/TrEMBL
Pfam DUF4587 UniProtKB/TrEMBL
UniProt A0A287CWV1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-13 CUNH21orf58  chromosome unknown C21orf58 homolog  LOC101968200  chromosome unknown open reading frame, human C21orf58  Symbol and/or name change 5135510 APPROVED