Trip11 (thyroid hormone receptor interactor 11) - Rat Genome Database

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Gene: Trip11 (thyroid hormone receptor interactor 11) Ictidomys tridecemlineatus
Analyze
Symbol: Trip11
Name: thyroid hormone receptor interactor 11
RGD ID: 12499788
Description: ENCODES a protein that exhibits small GTPase binding (inferred); INVOLVED IN bone development (ortholog); chondrocyte differentiation involved in endochondral bone morphogenesis (ortholog); Golgi organization (ortholog); ASSOCIATED WITH achondrogenesis (ortholog); achondrogenesis type IA (ortholog); autism spectrum disorder (ortholog); FOUND IN inner acrosomal membrane (ortholog); outer acrosomal membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: thyroid hormone receptor interactor 11, transcript variant X1; thyroid hormone receptor interactor 11, transcript variant X2; thyroid receptor-interacting protein 11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864013,167,028 - 13,233,555 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936733234,531 - 299,639 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936733233,723 - 300,150 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Trip11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864013,167,028 - 13,233,555 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936733234,531 - 299,639 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936733233,723 - 300,150 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIP11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381491,965,991 - 92,040,059 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1491,965,991 - 92,040,896 (-)EnsemblGRCh38hg38GRCh38
GRCh371492,432,335 - 92,506,403 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361491,505,614 - 91,576,139 (-)NCBINCBI36Build 36hg18NCBI36
Build 341491,505,613 - 91,576,139NCBI
Celera1472,486,852 - 72,559,002 (-)NCBICelera
Cytogenetic Map14q32.12NCBI
HuRef1472,615,074 - 72,687,331 (-)NCBIHuRef
CHM1_11492,372,573 - 92,444,720 (-)NCBICHM1_1
T2T-CHM13v2.01486,195,456 - 86,269,539 (-)NCBIT2T-CHM13v2.0
Trip11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912101,800,304 - 101,879,463 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12101,800,302 - 101,879,526 (-)EnsemblGRCm39 Ensembl
GRCm3812101,834,045 - 101,913,171 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12101,834,043 - 101,913,267 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712103,075,582 - 103,151,381 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612102,235,058 - 102,314,813 (-)NCBIMGSCv36mm8
Celera12103,046,997 - 103,129,958 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1251.3NCBI
Trip11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86126,760,263 - 126,832,619 (-)NCBIGRCr8
mRatBN7.26120,995,242 - 121,067,693 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6120,998,733 - 121,067,781 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6121,152,341 - 121,216,900 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06121,447,603 - 121,512,158 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06120,783,922 - 120,848,473 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06125,741,520 - 125,812,926 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6125,742,796 - 125,812,517 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06134,953,134 - 135,024,813 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46126,119,081 - 126,188,777 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6118,497,405 - 118,564,538 (-)NCBICelera
Cytogenetic Map6q32NCBI
Trip11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543814,322,576 - 14,394,022 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543814,327,400 - 14,394,022 (-)NCBIChiLan1.0ChiLan1.0
TRIP11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21593,124,743 - 93,209,483 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11492,343,082 - 92,429,482 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01472,601,649 - 72,675,784 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11491,945,392 - 92,019,231 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1491,945,392 - 92,019,231 (-)Ensemblpanpan1.1panPan2
TRIP11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.181,244,104 - 1,314,251 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl81,247,155 - 1,354,720 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha81,263,077 - 1,333,338 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.081,293,187 - 1,363,397 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl81,294,502 - 1,363,357 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.181,231,115 - 1,301,352 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.081,187,556 - 1,257,315 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.081,308,407 - 1,378,640 (-)NCBIUU_Cfam_GSD_1.0
TRIP11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7113,524,430 - 113,600,088 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17113,524,406 - 113,600,411 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27120,132,495 - 120,208,065 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIP11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12469,724,614 - 69,793,413 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2469,751,193 - 69,793,039 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605356,972,255 - 57,042,878 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trip11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247348,608,325 - 8,682,299 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247348,604,565 - 8,682,597 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000015651   ⟹   ENSSTOP00000014008
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936733234,531 - 299,639 (-)Ensembl
RefSeq Acc Id: XM_013364688   ⟹   XP_013220142
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864013,167,028 - 13,233,555 (+)NCBI
SpeTri2.0NW_004936733233,723 - 300,150 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021735826   ⟹   XP_021591501
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864013,182,079 - 13,233,555 (+)NCBI
SpeTri2.0NW_004936733233,723 - 284,907 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040275279   ⟹   XP_040131213
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864013,167,028 - 13,233,555 (+)NCBI
RefSeq Acc Id: XM_040275280   ⟹   XP_040131214
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864013,167,028 - 13,233,555 (+)NCBI
Protein Sequences
Protein RefSeqs XP_013220142 (Get FASTA)   NCBI Sequence Viewer  
  XP_021591501 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131213 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131214 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014008.3
GenBank Protein KAG3260497 (Get FASTA)   NCBI Sequence Viewer  
  KAG3260498 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013220142   ⟸   XM_013364688
- Peptide Label: isoform X1
- UniProtKB: I3MQ38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021591501   ⟸   XM_021735826
- Peptide Label: isoform X4
- UniProtKB: I3MQ38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040131214   ⟸   XM_040275280
- Peptide Label: isoform X3
- UniProtKB: I3MQ38 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040131213   ⟸   XM_040275279
- Peptide Label: isoform X2
- UniProtKB: I3MQ38 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000014008   ⟸   ENSSTOT00000015651
Protein Domains
GRIP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015642 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015651.3 UniProtKB/TrEMBL
InterPro GRAB UniProtKB/TrEMBL
  GRIP_dom UniProtKB/TrEMBL
NCBI Gene Trip11 ENTREZGENE
PANTHER MYOSIN HEAVY CHAIN - RELATED UniProtKB/TrEMBL
  THYROID RECEPTOR-INTERACTING PROTEIN 11 UniProtKB/TrEMBL
Pfam GRAB UniProtKB/TrEMBL
PROSITE GRIP UniProtKB/TrEMBL
UniProt I3MQ38 ENTREZGENE, UniProtKB/TrEMBL