Nup214 (nucleoporin 214) - Rat Genome Database

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Gene: Nup214 (nucleoporin 214) Ictidomys tridecemlineatus
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Symbol: Nup214
Name: nucleoporin 214
RGD ID: 12499649
Description: ENCODES a protein that exhibits nuclear localization sequence binding (ortholog); INVOLVED IN mitotic cell cycle (ortholog); mRNA export from nucleus (ortholog); protein export from nucleus (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; mRNA nuclear export pathway; NXF1-NXT1 export pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); acute myeloid leukemia (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2K (ortholog); FOUND IN nuclear envelope (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: nuclear pore complex protein Nup214
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947198,212,850 - 198,299,295 (+)NCBI
SpeTri2.0NW_00493648717,981,402 - 18,067,828 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Nup214
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947198,212,850 - 198,299,295 (+)NCBI
SpeTri2.0NW_00493648717,981,402 - 18,067,828 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP214
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9131,125,586 - 131,234,663 (+)EnsemblGRCh38hg38GRCh38
GRCh389131,125,586 - 131,234,663 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh379134,000,973 - 134,110,050 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369132,990,802 - 133,098,912 (+)NCBINCBI36hg18NCBI36
Build 349131,030,534 - 131,138,644NCBI
Celera9104,540,049 - 104,648,175 (+)NCBI
Cytogenetic Map9q34.13NCBI
HuRef9103,491,679 - 103,601,026 (+)NCBIHuRef
CHM1_19134,150,562 - 134,259,670 (+)NCBICHM1_1
Nup214
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39231,863,871 - 31,943,987 (+)NCBIGRCm39mm39
GRCm39 Ensembl231,864,448 - 31,943,987 (+)Ensembl
GRCm38231,974,408 - 32,053,975 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl231,974,436 - 32,053,975 (+)EnsemblGRCm38mm10GRCm38
MGSCv37231,829,970 - 31,909,495 (+)NCBIGRCm37mm9NCBIm37
MGSCv36231,796,448 - 31,875,984 (+)NCBImm8
Celera231,677,520 - 31,757,311 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.97NCBI
Nup214
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2315,255,111 - 15,340,568 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl315,255,119 - 15,340,568 (+)Ensembl
Rnor_6.0310,993,584 - 11,070,638 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.039,227,869 - 9,236,878 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl39,227,823 - 9,236,736 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl310,999,186 - 11,070,640 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,351,780 - 16,423,232 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0314,588,337 - 14,597,175 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,079,165 - 11,165,173 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1310,975,349 - 11,062,057 (+)NCBI
Celera310,002,669 - 10,087,697 (+)NCBICelera
Cytogenetic Map3p12NCBI
Nup214
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955513955,639 - 1,038,912 (+)NCBIChiLan1.0ChiLan1.0
NUP214
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19130,893,110 - 131,001,305 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9130,893,110 - 131,001,305 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v09102,246,575 - 102,355,291 (+)NCBIMhudiblu_PPA_v0panPan3
NUP214
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1952,840,300 - 52,943,785 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl952,841,096 - 52,947,770 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha952,105,504 - 52,144,484 (-)NCBI
ROS_Cfam_1.0953,741,391 - 53,844,849 (-)NCBI
ROS_Cfam_1.0 Ensembl953,741,391 - 53,844,989 (-)Ensembl
UMICH_Zoey_3.1952,518,914 - 52,622,350 (-)NCBI
UNSW_CanFamBas_1.0952,839,417 - 52,942,849 (-)NCBI
UU_Cfam_GSD_1.0952,932,424 - 53,035,905 (-)NCBI
NUP214
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1271,103,833 - 271,210,290 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11271,103,838 - 271,210,292 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21305,130,794 - 305,237,538 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NUP214
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1126,905,047 - 7,014,907 (-)NCBIChlSab1.1chlSab2
ChlSab1.1126,905,047 - 7,014,907 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl126,903,096 - 7,014,887 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660798,486,610 - 8,597,948 (+)NCBIVero_WHO_p1.0
Nup214
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247604,655,347 - 4,738,811 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005321088   ⟹   XP_005321145
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947198,212,875 - 198,299,295 (+)NCBI
SpeTri2.0NW_00493648717,981,402 - 18,067,828 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013356741   ⟹   XP_013212195
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947198,212,850 - 198,299,295 (+)NCBI
SpeTri2.0NW_00493648717,981,402 - 18,067,828 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040286503   ⟹   XP_040142437
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947198,212,875 - 198,299,295 (+)NCBI
RefSeq Acc Id: XM_040286504   ⟹   XP_040142438
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947198,224,527 - 198,299,295 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_013212195   ⟸   XM_013356741
- Peptide Label: isoform X3
- UniProtKB: I3MHR1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005321145   ⟸   XM_005321088
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040142437   ⟸   XM_040286503
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040142438   ⟸   XM_040286504
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011636 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000010451 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011647 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro Nucleoporin UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
NCBI Gene Nup214 ENTREZGENE
PANTHER PTHR23193 UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
UniProt I3MHR1 ENTREZGENE, UniProtKB/TrEMBL