LOC101973285 (histone H2A type 1) - Rat Genome Database

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Gene: LOC101973285 (histone H2A type 1) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101973285 (Ensembl: H2AC17)
Name: histone H2A type 1
RGD ID: 12499273
Description: ENCODES a protein that exhibits DNA binding (inferred); enzyme binding (inferred); protein heterodimerization activity (inferred); FOUND IN chromosome (inferred); nucleosome (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946437,853 - 438,314 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366713,183,292 - 3,183,684 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366713,183,245 - 3,183,688 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (IEA)
nucleosome  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013363675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000028165   ⟹   ENSSTOP00000015276
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366713,183,292 - 3,183,684 (-)Ensembl
RefSeq Acc Id: XM_013363675   ⟹   XP_013219129
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946437,853 - 438,314 (+)NCBI
SpeTri2.0NW_0049366713,183,245 - 3,183,688 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013219129 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000015190.2
  ENSSTOP00000015276.1
  ENSSTOP00000015694.1
  ENSSTOP00000022139.1
GenBank Protein KAG3288493 (Get FASTA)   NCBI Sequence Viewer  
  KAG3288494 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013219129   ⟸   XM_013363675
- UniProtKB: I3MT31 (UniProtKB/TrEMBL),   I3MSU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000015276   ⟸   ENSSTOT00000028165
Protein Domains
Histone H2A C-terminal   Histone H2A/H2B/H3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000023857 UniProtKB/TrEMBL
  ENSSTOG00000026144 UniProtKB/TrEMBL
  ENSSTOG00000026866 UniProtKB/TrEMBL
  ENSSTOG00000027672 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000023533.2 UniProtKB/TrEMBL
  ENSSTOT00000024369.1 UniProtKB/TrEMBL
  ENSSTOT00000026954.1 UniProtKB/TrEMBL
  ENSSTOT00000028165.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H2A_C UniProtKB/TrEMBL
  Histone_H2A_CS UniProtKB/TrEMBL
NCBI Gene LOC101973285 ENTREZGENE
PANTHER HISTONE H2A.J UniProtKB/TrEMBL
  PTHR23430 UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
  Histone_H2A_C UniProtKB/TrEMBL
PRINTS HISTONEH2A UniProtKB/TrEMBL
PROSITE HISTONE_H2A UniProtKB/TrEMBL
SMART H2A UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt I3MSU5 ENTREZGENE, UniProtKB/TrEMBL
  I3MT31 ENTREZGENE, UniProtKB/TrEMBL