Atxn7l2 (ataxin 7 like 2) - Rat Genome Database

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Gene: Atxn7l2 (ataxin 7 like 2) Ictidomys tridecemlineatus
Analyze
Symbol: Atxn7l2
Name: ataxin 7 like 2
RGD ID: 12498909
Description: ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 63 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ataxin-7-like protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505819,132,917 - 19,141,463 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936704972,242 - 981,217 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936704972,594 - 981,290 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
Atxn7l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505819,132,917 - 19,141,463 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936704972,242 - 981,217 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936704972,594 - 981,290 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATXN7L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381109,483,905 - 109,492,804 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1109,483,479 - 109,492,804 (+)EnsemblGRCh38hg38GRCh38
GRCh371110,026,527 - 110,035,426 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361109,828,084 - 109,836,879 (+)NCBINCBI36Build 36hg18NCBI36
Build 341109,738,602 - 109,747,396NCBI
Celera1108,295,911 - 108,304,776 (+)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1107,919,489 - 107,928,354 (+)NCBIHuRef
CHM1_11110,141,425 - 110,150,290 (+)NCBICHM1_1
T2T-CHM13v2.01109,516,680 - 109,525,579 (+)NCBIT2T-CHM13v2.0
Atxn7l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393108,109,538 - 108,117,843 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3108,109,538 - 108,118,250 (-)EnsemblGRCm39 Ensembl
GRCm383108,202,222 - 108,210,577 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3108,202,222 - 108,210,934 (-)EnsemblGRCm38mm10GRCm38
MGSCv373108,005,173 - 108,013,852 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363108,330,311 - 108,338,990 (-)NCBIMGSCv36mm8
Celera3110,536,013 - 110,544,743 (-)NCBICelera
Cytogenetic Map3F2.3NCBI
cM Map346.87NCBI
Atxn7l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82198,527,066 - 198,535,899 (-)NCBIGRCr8
mRatBN7.22195,838,920 - 195,847,339 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2195,838,981 - 195,847,315 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2203,482,140 - 203,490,559 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02201,364,254 - 201,372,673 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02196,181,203 - 196,189,622 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02210,992,904 - 211,001,287 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2210,992,953 - 211,001,258 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02230,462,242 - 230,470,612 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42203,767,580 - 203,776,399 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12203,730,331 - 203,738,659 (-)NCBI
Celera2188,483,792 - 188,492,175 (-)NCBICelera
Cytogenetic Map2q34NCBI
Atxn7l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543512,904,829 - 12,914,694 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543512,904,829 - 12,913,351 (+)NCBIChiLan1.0ChiLan1.0
ATXN7L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21117,811,990 - 117,820,820 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11116,971,694 - 116,980,725 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01111,861,243 - 111,870,135 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11111,089,893 - 111,098,688 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1111,089,913 - 111,097,699 (+)Ensemblpanpan1.1panPan2
ATXN7L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1642,366,974 - 42,375,878 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl642,366,874 - 42,375,846 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha645,141,839 - 45,150,754 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0642,697,559 - 42,706,476 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl642,697,576 - 42,706,478 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1642,430,354 - 42,439,264 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0642,388,210 - 42,397,127 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0642,823,201 - 42,832,120 (-)NCBIUU_Cfam_GSD_1.0
ATXN7L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4110,637,237 - 110,646,041 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14110,637,233 - 110,646,081 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24121,095,593 - 121,104,444 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATXN7L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12024,054,350 - 24,063,159 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2024,054,483 - 24,063,064 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603834,397,251 - 34,406,058 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atxn7l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247725,211,062 - 5,220,222 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247725,211,616 - 5,220,295 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000030089   ⟹   ENSSTOP00000017167
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936704974,793 - 981,093 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000038949   ⟹   ENSSTOP00000028915
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936704972,242 - 981,217 (+)Ensembl
RefSeq Acc Id: XM_005338084   ⟹   XP_005338141
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505819,132,917 - 19,141,463 (-)NCBI
SpeTri2.0NW_004936704972,594 - 981,290 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040287440   ⟹   XP_040143374
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505819,133,074 - 19,141,440 (-)NCBI
RefSeq Acc Id: XM_040287441   ⟹   XP_040143375
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505819,133,074 - 19,139,006 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005338141 (Get FASTA)   NCBI Sequence Viewer  
  XP_040143374 (Get FASTA)   NCBI Sequence Viewer  
  XP_040143375 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000017167.2
  ENSSTOP00000028915.1
GenBank Protein KAG3281330 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005338141   ⟸   XM_005338084
- Peptide Label: isoform X2
- UniProtKB: A0A287D5W7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040143374   ⟸   XM_040287440
- Peptide Label: isoform X1
- UniProtKB: A0A287D5W7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040143375   ⟸   XM_040287441
- Peptide Label: isoform X3
- UniProtKB: I3MYH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000017167   ⟸   ENSSTOT00000030089
RefSeq Acc Id: ENSSTOP00000028915   ⟸   ENSSTOT00000038949
Protein Domains
SCA7


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028725 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000030089.2 UniProtKB/TrEMBL
  ENSSTOT00000038949.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.1270 UniProtKB/TrEMBL
InterPro SCA7_dom UniProtKB/TrEMBL
NCBI Gene Atxn7l2 ENTREZGENE
PANTHER ATAXIN 7 RELATED UniProtKB/TrEMBL
  ATAXIN-7-LIKE PROTEIN 2 UniProtKB/TrEMBL
Pfam SCA7 UniProtKB/TrEMBL
PROSITE SCA7 UniProtKB/TrEMBL
UniProt A0A287D5W7 ENTREZGENE, UniProtKB/TrEMBL
  I3MYH1 ENTREZGENE, UniProtKB/TrEMBL