Stmn4 (stathmin 4) - Rat Genome Database

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Gene: Stmn4 (stathmin 4) Ictidomys tridecemlineatus
Analyze
Symbol: Stmn4
Name: stathmin 4
RGD ID: 12497893
Description: ENCODES a protein that exhibits tubulin binding (inferred); INVOLVED IN microtubule depolymerization (inferred); neuron projection development (inferred); regulation of microtubule polymerization or depolymerization (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); neuron projection (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: stathmin 4, transcript variant X1; stathmin 4, transcript variant X2; stathmin 4, transcript variant X3; stathmin 4, transcript variant X4; stathmin-4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049438,432,567 - 8,450,953 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936675135,198 - 153,601 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936675135,200 - 153,541 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Stmn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049438,432,567 - 8,450,953 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936675135,198 - 153,601 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936675135,200 - 153,541 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STMN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38827,235,308 - 27,258,404 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl827,235,308 - 27,258,420 (-)EnsemblGRCh38hg38GRCh38
GRCh37827,092,825 - 27,115,921 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36827,149,731 - 27,171,820 (-)NCBINCBI36Build 36hg18NCBI36
Build 34827,149,732 - 27,171,820NCBI
Celera826,056,724 - 26,078,813 (-)NCBICelera
Cytogenetic Map8p21.2NCBI
HuRef825,638,934 - 25,661,015 (-)NCBIHuRef
CHM1_1827,295,753 - 27,317,841 (-)NCBICHM1_1
T2T-CHM13v2.0827,512,166 - 27,535,258 (-)NCBIT2T-CHM13v2.0
Stmn4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391466,581,806 - 66,599,129 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1466,581,745 - 66,599,129 (+)EnsemblGRCm39 Ensembl
GRCm381466,344,210 - 66,361,680 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1466,344,296 - 66,361,680 (+)EnsemblGRCm38mm10GRCm38
MGSCv371466,963,212 - 66,980,517 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361465,298,485 - 65,315,790 (+)NCBIMGSCv36mm8
Celera1464,096,120 - 64,113,411 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1434.48NCBI
Stmn4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81544,716,825 - 44,734,776 (+)NCBIGRCr8
mRatBN7.21540,541,305 - 40,559,253 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1540,541,357 - 40,559,253 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1542,409,086 - 42,426,670 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01543,559,288 - 43,576,887 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01542,001,642 - 42,019,538 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01543,007,901 - 43,025,852 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1543,007,908 - 43,025,852 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01548,564,775 - 48,585,844 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41545,779,352 - 45,797,949 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11545,795,145 - 45,813,729 (+)NCBI
Celera1540,214,566 - 40,232,681 (+)NCBICelera
Cytogenetic Map15p12NCBI
Stmn4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540349,768,592 - 49,789,938 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540349,768,592 - 49,789,429 (-)NCBIChiLan1.0ChiLan1.0
STMN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2745,766,254 - 45,788,246 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1821,480,461 - 21,502,450 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0826,504,801 - 26,527,773 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1823,707,692 - 23,730,635 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl823,707,692 - 23,730,629 (-)Ensemblpanpan1.1panPan2
STMN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12530,330,771 - 30,352,117 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2530,330,823 - 30,351,666 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2530,919,163 - 30,940,502 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02530,523,239 - 30,544,587 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2530,523,341 - 30,545,204 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12530,453,019 - 30,474,354 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02530,334,281 - 30,355,632 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02530,500,905 - 30,522,251 (+)NCBIUU_Cfam_GSD_1.0
STMN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1410,987,337 - 11,007,628 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11410,986,510 - 11,007,757 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21412,166,295 - 12,186,613 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STMN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1825,344,364 - 25,365,985 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl825,344,323 - 25,370,276 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605216,782,016 - 16,804,443 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stmn4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475821,982,693 - 22,003,888 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475821,983,611 - 22,003,790 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000007193   ⟹   ENSSTOP00000006428
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936675135,198 - 153,601 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000036875   ⟹   ENSSTOP00000027244
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936675135,198 - 153,601 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000040791   ⟹   ENSSTOP00000024321
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936675136,819 - 153,601 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000041051   ⟹   ENSSTOP00000028756
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936675135,198 - 153,601 (-)Ensembl
RefSeq Acc Id: XM_005337204   ⟹   XP_005337261
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049438,432,567 - 8,450,951 (+)NCBI
SpeTri2.0NW_004936675135,204 - 153,541 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005337206   ⟹   XP_005337263
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049438,432,568 - 8,450,953 (+)NCBI
SpeTri2.0NW_004936675135,204 - 153,541 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734493   ⟹   XP_021590168
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049438,432,567 - 8,450,951 (+)NCBI
SpeTri2.0NW_004936675135,200 - 153,541 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734494   ⟹   XP_021590169
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049438,432,567 - 8,450,953 (+)NCBI
SpeTri2.0NW_004936675135,200 - 153,541 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005337263   ⟸   XM_005337206
- Peptide Label: isoform X3
- UniProtKB: A0A287D144 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005337261   ⟸   XM_005337204
- Peptide Label: isoform X1
- UniProtKB: I3M998 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021590169   ⟸   XM_021734494
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021590168   ⟸   XM_021734493
- Peptide Label: isoform X2
- UniProtKB: A0A287CSQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000028756   ⟸   ENSSTOT00000041051
RefSeq Acc Id: ENSSTOP00000006428   ⟸   ENSSTOT00000007193
RefSeq Acc Id: ENSSTOP00000024321   ⟸   ENSSTOT00000040791
RefSeq Acc Id: ENSSTOP00000027244   ⟸   ENSSTOT00000036875


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007200 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000007193.3 UniProtKB/TrEMBL
  ENSSTOT00000036875.1 UniProtKB/TrEMBL
  ENSSTOT00000040791.1 UniProtKB/TrEMBL
  ENSSTOT00000041051.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.280.30 UniProtKB/TrEMBL
InterPro Stathmin_CS UniProtKB/TrEMBL
  Stathmin_fam UniProtKB/TrEMBL
  Stathmin_sf UniProtKB/TrEMBL
NCBI Gene Stmn4 ENTREZGENE
PANTHER PTHR10104 UniProtKB/TrEMBL
  PTHR10104:SF6 UniProtKB/TrEMBL
Pfam Stathmin UniProtKB/TrEMBL
PIRSF Stathmin UniProtKB/TrEMBL
PRINTS STATHMIN UniProtKB/TrEMBL
PROSITE STATHMIN_1 UniProtKB/TrEMBL
  STATHMIN_2 UniProtKB/TrEMBL
  STATHMIN_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF101494 UniProtKB/TrEMBL
UniProt A0A287CSQ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A287D144 ENTREZGENE, UniProtKB/TrEMBL
  I3M998 ENTREZGENE, UniProtKB/TrEMBL