Catsper3 (cation channel sperm associated 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Catsper3 (cation channel sperm associated 3) Ictidomys tridecemlineatus
Analyze
Symbol: Catsper3
Name: cation channel sperm associated 3
RGD ID: 12497565
Description: ENCODES a protein that exhibits monoatomic ion channel activity (inferred); voltage-gated calcium channel activity (inferred); INVOLVED IN establishment of localization in cell (ortholog); flagellated sperm motility (ortholog); sodium ion transport (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN acrosomal vesicle (inferred); CatSper complex (inferred); endoplasmic reticulum (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cation channel sperm-associated protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213123,137,841 - 123,169,698 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365972,166,262 - 2,194,550 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365972,164,339 - 2,194,562 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Catsper3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213123,137,841 - 123,169,698 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365972,166,262 - 2,194,550 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365972,164,339 - 2,194,562 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CATSPER3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385134,967,907 - 135,011,696 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5134,967,907 - 135,011,696 (+)EnsemblGRCh38hg38GRCh38
GRCh375134,303,597 - 134,347,386 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365134,331,513 - 134,375,285 (+)NCBINCBI36Build 36hg18NCBI36
Build 345134,331,512 - 134,375,285NCBI
Celera5130,427,337 - 130,471,182 (+)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5129,491,536 - 129,535,385 (+)NCBIHuRef
CHM1_15133,736,243 - 133,780,066 (+)NCBICHM1_1
T2T-CHM13v2.05135,494,874 - 135,538,709 (+)NCBIT2T-CHM13v2.0
Catsper3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391355,932,313 - 55,971,861 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1355,932,381 - 55,956,811 (+)EnsemblGRCm39 Ensembl
GRCm381355,784,500 - 55,824,048 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1355,784,568 - 55,808,998 (+)EnsemblGRCm38mm10GRCm38
MGSCv371355,885,940 - 55,910,359 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361355,794,201 - 55,818,620 (+)NCBIMGSCv36mm8
Celera1356,835,127 - 56,859,609 (+)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1330.06NCBI
Catsper3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8178,820,738 - 8,846,063 (-)NCBIGRCr8
mRatBN7.2178,810,122 - 8,840,881 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,815,561 - 8,840,864 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx178,830,656 - 8,856,459 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01710,363,260 - 10,385,736 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0178,827,039 - 8,852,840 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,900,034 - 8,925,385 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,900,036 - 8,925,503 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01711,065,010 - 11,090,156 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41714,856,781 - 14,891,047 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11714,857,795 - 14,919,947 (-)NCBI
Celera178,897,756 - 8,923,042 (-)NCBICelera
Cytogenetic Map17p14NCBI
Catsper3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540830,150,197 - 30,179,872 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540830,150,736 - 30,179,834 (+)NCBIChiLan1.0ChiLan1.0
CATSPER3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24130,258,105 - 130,308,793 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15128,394,688 - 128,448,357 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05130,362,139 - 130,406,888 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15136,503,846 - 136,548,162 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5136,503,846 - 136,548,162 (+)Ensemblpanpan1.1panPan2
CATSPER3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11123,018,770 - 23,057,945 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1123,021,663 - 23,052,820 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1121,768,102 - 21,807,475 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01123,825,102 - 23,864,516 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1123,828,241 - 23,859,391 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11122,524,303 - 22,563,684 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01122,390,242 - 22,429,630 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01123,032,998 - 23,072,408 (+)NCBIUU_Cfam_GSD_1.0
CATSPER3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2137,139,749 - 137,175,305 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12137,139,743 - 137,175,305 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap2q27-28NCBI
CATSPER3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12337,740,072 - 37,791,261 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2337,743,673 - 37,791,176 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603440,124,763 - 40,171,804 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Catsper3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473312,050,715 - 12,114,160 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473312,050,823 - 12,084,546 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000004039   ⟹   ENSSTOP00000003623
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365972,166,262 - 2,194,550 (+)Ensembl
RefSeq Acc Id: XM_040272906   ⟹   XP_040128840
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213123,137,841 - 123,169,698 (+)NCBI
RefSeq Acc Id: XM_040272907   ⟹   XP_040128841
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213123,137,841 - 123,169,698 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040128840 (Get FASTA)   NCBI Sequence Viewer  
  XP_040128841 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003623.3
GenBank Protein KAG3265800 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040128841   ⟸   XM_040272907
- Peptide Label: isoform X2
- UniProtKB: I3M3H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040128840   ⟸   XM_040272906
- Peptide Label: isoform X1
- UniProtKB: I3M3H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000003623   ⟸   ENSSTOT00000004039
Protein Domains
Ion transport


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004050 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004039.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/TrEMBL
InterPro Ion_trans_dom UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/TrEMBL
NCBI Gene Catsper3 ENTREZGENE
PANTHER CATION CHANNEL SPERM-ASSOCIATED PROTEIN 3 UniProtKB/TrEMBL
  CATION CHANNEL SPERM-ASSOCIATED PROTEIN 3 UniProtKB/TrEMBL
Pfam Ion_trans UniProtKB/TrEMBL
Superfamily-SCOP Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt I3M3H4 ENTREZGENE, UniProtKB/TrEMBL