Lpcat2 (lysophosphatidylcholine acyltransferase 2)

Gene: Lpcat2 (lysophosphatidylcholine acyltransferase 2) Ictidomys tridecemlineatus

Analyze

Symbol:

Lpcat2

Name:

lysophosphatidylcholine acyltransferase 2

RGD ID:

12497213

Description:

ENCODES a protein that exhibits 1-acylglycerol-3-phosphate O-acyltransferase activity (inferred); 1-acylglycerophosphocholine O-acyltransferase activity (inferred); 1-alkylglycerophosphocholine O-acetyltransferase activity (inferred); INVOLVED IN lipid metabolic process (inferred); membrane organization (inferred); phosphatidylcholine acyl-chain remodeling (inferred); ASSOCIATED WITH genetic disease (ortholog); Osteolysis Hereditary Multicentric (ortholog); polycystic ovary syndrome (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); Golgi stack (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

lysophosphatidylcholine acyltransferase 2, transcript variant X1; lysophosphatidylcholine acyltransferase 2, transcript variant X2; lysophosphatidylcholine acyltransferase 2, transcript variant X3

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	51,700,010 - 51,758,552 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	7,830,506 - 7,889,151 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	7,830,544 - 7,889,437 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Osteolysis Hereditary Multicentric (ISO)

polycystic ovary syndrome (ISO)

Winchester syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

lipid metabolic process (IEA)

membrane organization (IEA)

phosphatidylcholine acyl-chain remodeling (IEA)

phospholipid metabolic process (IEA)

platelet activating factor biosynthetic process (IEA)

Cellular Component

endoplasmic reticulum (IEA)

endoplasmic reticulum membrane (IEA)

Golgi stack (IEA)

lipid droplet (IEA)

membrane (IEA)

Molecular Function

1-acylglycerol-3-phosphate O-acyltransferase activity (IEA)

1-acylglycerophosphocholine O-acyltransferase activity (IEA)

1-alkylglycerophosphocholine O-acetyltransferase activity (IEA)

acyltransferase activity (IEA)

calcium ion binding (IEA)

lysophosphatidic acid acyltransferase activity (IEA)

metal ion binding (IEA)

O-acyltransferase activity (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Lpcat2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	51,700,010 - 51,758,552 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	7,830,506 - 7,889,151 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	7,830,544 - 7,889,437 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LPCAT2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	55,509,072 - 55,586,666 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	55,509,072 - 55,586,666 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	55,542,984 - 55,620,578 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	54,100,455 - 54,174,655 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	40,057,142 - 40,134,813 (+)	NCBI		Celera
Cytogenetic Map	16	q12.2	NCBI
HuRef	16	41,430,311 - 41,507,976 (+)	NCBI		HuRef
CHM1_1	16	56,950,170 - 57,027,838 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	61,307,195 - 61,384,805 (+)	NCBI		T2T-CHM13v2.0

Lpcat2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	93,581,948 - 93,645,907 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	93,581,967 - 93,645,907 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	92,855,313 - 92,919,279 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	92,855,339 - 92,919,279 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	95,379,249 - 95,443,178 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	95,744,478 - 95,808,407 (+)	NCBI		MGSCv36	mm8
Celera	8	97,185,275 - 97,248,734 (+)	NCBI		Celera
Cytogenetic Map	8	C5	NCBI
cM Map	8	44.99	NCBI

Lpcat2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	30,261,369 - 30,325,715 (-)	NCBI		GRCr8
mRatBN7.2	19	14,088,389 - 14,152,742 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	14,089,686 - 14,152,829 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	15,785,450 - 15,848,307 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	20,980,222 - 21,043,097 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	23,925,819 - 23,988,738 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	15,470,177 - 15,540,704 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	15,469,303 - 15,540,773 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	26,567,104 - 26,627,661 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	15,179,233 - 15,243,969 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	19	14,013,217 - 14,075,699 (-)	NCBI		Celera
Cytogenetic Map	19	p11	NCBI

Lpcat2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955433	13,052,605 - 13,119,775 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955433	13,052,480 - 13,120,197 (+)	NCBI	ChiLan1.0	ChiLan1.0

LPCAT2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	64,936,439 - 65,013,248 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	70,855,458 - 70,931,763 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	35,740,441 - 35,817,891 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	54,845,848 - 54,923,231 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	54,847,221 - 54,921,122 (+)	Ensembl	panpan1.1		panPan2

LPCAT2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	60,401,317 - 60,469,177 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	60,388,557 - 60,469,199 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	57,034,533 - 57,103,815 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	60,946,479 - 61,014,248 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	60,946,479 - 61,014,303 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	57,773,392 - 57,842,851 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	58,797,620 - 58,867,107 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	59,675,877 - 59,745,398 (-)	NCBI		UU_Cfam_GSD_1.0

LPCAT2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	29,998,488 - 30,056,862 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	29,999,504 - 30,056,858 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	27,466,826 - 27,526,271 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LPCAT2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	41,293,191 - 41,369,443 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	41,294,580 - 41,372,825 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	34,975,855 - 35,053,564 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lpcat2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624757	1,374,789 - 1,448,606 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624757	1,376,521 - 1,448,582 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005318186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021721335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021721338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000011538 ⟹ ENSSTOP00000010356

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936475	7,830,653 - 7,887,332 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000036200 ⟹ ENSSTOP00000030852

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936475	7,830,506 - 7,889,151 (+)	Ensembl

RefSeq Acc Id:

XM_005318186 ⟹ XP_005318243

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	51,700,010 - 51,758,550 (-)	NCBI
SpeTri2.0	NW_004936475	7,830,544 - 7,889,436 (+)	NCBI

Sequence:

show sequence

AGCGCCTCGGGCTGGGACTCTTGAGGGGCTGCGGCTCGGTCTGGGCTGGGGTGCTGGCTCGCGA
GCTCGGCTTCCTTCTCTGCGCTCGGGTCCCACGCCCAGCTCGGCCATGAACCGGTGCTCCGAGG
CGGCGGCGGTGGCGGCCACCGTGCCAGGCTCCGGCGTCGGGGCCGCAGAGCATCGGCCGCCCAT
GGTGCCTCGCCAGGCGTCCTTCATCCCGCCGCCGGTGCCCAACCCCTTCGTGCAGCACACGGGG
CTCGGCACGGCCAGGCTGCTGCAGGCTTTCCTTCTTGGAATCATCCTGCTCCCACTTCGCCTCA
TTTTGATTGGATTGCTTTTCTTATTATCTTGGCCATTTGCCGCCGCCTTCATAGCTTGCTGTCC
CGAGAAGCCGACTTACCCAGTGACCGACTGGAGACGGACAGTTACTCACTTGGTTTTGAGGTAT
CTGGGTTACGCCCTCTACTTTTCCATGGGATTTAAAGTGAGTGTGAAAGGAAAGCCTGCGAGCG
CCTTGGAAGCACCCATTTTTGTTGTCGCCCCTCATTCGTCCTTCTTTGATGGGATTGCCTGTAT
TGTGTCTGGACTGCCTTCGTTGGTGTCTCGGTATGAAACTGTCCAGATCCCTATGATTGGCAGT
CTCTTACGGGCCGTGCAGCCAGTGTTGGTGTCCCGTGTGGATCCGGATTCCCGAAAGAACACAA
TAAATGAAATAATAAAGCGAGCGACCTCCGGAGGGGAGTGGCCCCAGATACTAGTTTTCCCAGA
AGGTACTTGTACTAATCGCTCCTGTTTGATTACTTTTAAACCAGGAGCCTTCATTCCGGGAGTC
CCCGTGCAGCCCATCCTCCTCAGATACCCCAACAAGCTGGATACTGTGACCTGGACATGGCAAG
GATATACATTCATCCAGCTTTGTGTGCTGACTTTCTGCCAGCCCTTCACAAAGGTGGAAATCGA
GTTTATGCCTGTTCAAGTACCAAGTGATGCAGAAAAAAACGATCCTGTTCTTTTTGCCAATAGA
GTCCGCAATTTAATGGCAGAAGCTCTGGGGATACCTGTGACAGATCATACCTATGAAGACTGCA
GATTGATGATTTCAGCAGGACAGCTAACATTGCCCATGGAAGCTGGGTTGGTGGAATTTACTAA
AATTAGCCAGAAATTAAAATTGGATTGGGATGGCATCCGTAAGCATTTGGATGAATATGCATCG
ATTGCACGTTCCTCAAAAGGTGGAAGAATTGGAATTGAAGAATTTGCTGAGTATTTAAAATTAC
CTGTTTCCGATGTCTTGAGACAACTTTTTGCTCTCTTTGACAGGAACCGCGATGGCACCATCGA
CTTCAGAGAGTACGTGATTGGCCTGGCCGTCTTGTGTCACCCGGCCAACACAGAGGAGATCATC
CAGGTGGCATTTAAGCTCTTTGATATTGATGAGGATGGCTATATAACGAAGGAAGAGTTTTCTA
CCATTCTCCAGGCTTCCCTGGGGCTGCCCAACCTCGATGTTTCGGGTCTCTTCAAGGAGATTTC
CCAAGGAGACTCTGTTTCCTATGAGGAATTCAAACTTTTTGCCTTAAGACATCCAGAATATGCT
AAGATATTTACAACGTACTTAGACCTCCAGACAAGCCATGTGTACTCACTGCCCAGGGAAGTCC
ACACAGCTGCCTCGGTTGCAAGTAATAAAGTCTGTCCTGAAGATCATGAAGATAGGACCTCGGA
CAAAAAAGATGACTGAAAGCAGCACCCCATGAAGAATATTGAAAGTATAAAAGCATTTATTGAT
AGTATTTCCAATGTGCATTTGAGGAATGATATTTAAAATGGGAAGCTTTTTTATACACATGATA
GGATTTCTTACTAAAAATGCTTTTATTAACTAGCAGATATGAAGTGGCATTCCTTCTCTTCTTT
GTTATATTATGCTTTACTGGTTTGTTTGCCAGTGATAAATACTGTATATTTTTATGGATTTTCC
AGTTTCATTAGCGTAACCAAATGAATACACTGGCAATCCTAGTTACTGGTCAGCAATAATCAAC
ACTGGAAAGAGTTTTAAAAAATACAAACACTGTTTAATCCACTTTCCTCTAAAAACCAGTAATA
CTGTGTTTCTCTAATTCCTTTCCTTTCTGAAAATAAGAAGAGTCTGAGAAGCATGGCAAAATGT
TGTATCTTCGCACTCCACAGATTCATTTTTTCATCTAAATTTCGTTTCTCAGATCACTGACTAT
GGGGAGGGGGGGCTCATTTTCTCTTTAACATGCATCTCTGTTGCAGATTTCTTTCAACCCACTT
CTAAGGAAATCATATCTTTTTACGTGATCTACAGGGTTAGGACTTGTTTGAAAGCTGACTGCTG
TGGCCAGAGGCTAGGTGGGAATCGCTGTGATTGAAGGGAACATTGATTGTCTAATGAGAAAATG
AATTGTTTGTCACAGAGTTGAATTTAATTTGGATTGGATGGTTCAGAAGGTAGCACTTGTCTGA
TAAATAAATCAGATTGGTTCTATTTATGTGATAGTAGAATTAATATATTTTATCATCCAAGAGG
GAGTTTTATTTGTTAAGTGTCTTCTCCAATTTTAGAGCTTGTCTGAAATATCTACATGGAAAGC
AGGAAGCTTCCAAAGTGTCACTAAATGCCAGAGAATTGAAAAACCTACTTTATTAATGCAAAAC
CACAGTTTATGCCCCAGGCAGGAATCCAATGGTCACATTTCTCCTCCAGGTTAAGCAATAATTT
CCCTGAAGTGCCATTTGTATTAGGTCTCATGTATGCATATTGCTAGTATCACTTATGTTTGAGA
TTTTGAACAAAGACCAATTTATTAAAATAATGTACATAAATAGTTTGTTCTTATTCTGAATTCA
GCCTTTGACACCAAACTCTTTGTTTTGGCTATGTTTCAGAATGTATTAATGATTCACCCCCCAA
GCTATTTTTTAAAAGTCATTTTTGAAGCTGAGAAGTATCATGAGAATGTCAGAGATTATATTTG
ATCAAGTATCACGATTTTAAACTAGTTTTTACATAGTAAGCAGTTAGTTTTCTAAATTGATGGG
TAAATATGTACTTGGGTAACTGAACACCAGAAAATTTCATCTATAAGTAAATGTAATTATTTAT
TTCTTGTATGTTGAAAGCATTTAGAAAAGGTGTTAAGGTGAGTGGAAACAATTGCTTAGGTGAA
ATAATTACTAAATAATTTTAATAATGTCTGTCATATGTGATGAATGTATGTAATACTCAGGTAC
CATGATATGTTATCATGGAAAAAACCACCTAATTTTTATTAATCATTAAAGAATGCATTATAAA
TTAAAGGCTTTCTTTCAGTAGGGCTTTTAAAAATGATCCTATCATTTTTCTGTTTTAAAATAAT
GGTTTATGCTCATTACTTCCACTTTTGAATGTAATGTTTCTATTTTATGATTCTGTTGCTGAAT
AAACCAACTTGCCACAGTAAACATTCTTGACTTTGCCGTTTTGCCGCCATGTACTATGCTTCTT
AATATCATGTGTGAGATGTGTTTGCACTTGGAGGAGTTGATGAGTCATTTTATTTGCATTTTAA
CTTCATGAAATGTCAGACGTGGTAAAAACTCATTACCCCCAAGAAGCAATCCGTATTATTCATA
CAGAACTTGGCTTTGCAGGGGTTGGATGTGCCCCAACACAGGCTGTGGTCAGCAGTCATCACAA
CTGGACAGGCCTCTCCTTGTGTCCCTCTTAACAGTGACTTCTTCCAGAAACACTTTTATCTTCT
TAAGATTTAAAGTGAAGAATTAAGTTTATTAAATCTGTTAAATGCTCTGTGGTTTTATATACTA
ATTTGGGG

hide sequence

RefSeq Acc Id:

XM_021721335 ⟹ XP_021577010

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	51,700,010 - 51,758,551 (-)	NCBI
SpeTri2.0	NW_004936475	7,830,544 - 7,889,436 (+)	NCBI

Sequence:

show sequence

AGCGCCTCGGGCTGGGACTCTTGAGGGGCTGCGGCTCGGTCTGGGCTGGGGTGCTGGCTCGCGA
GCTCGGCTTCCTTCTCTGCGCTCGGGTCCCACGCCCAGCTCGGCCATGAACCGGTGCTCCGAGG
CGGCGGCGGTGGCGGCCACCGTGCCAGGCTCCGGCGTCGGGGCCGCAGAGCATCGGCCGCCCAT
GGTGCCTCGCCAGGCGTCCTTCATCCCGCCGCCGGTGCCCAACCCCTTCGTGCAGCACACGGGG
CTCGGCACGGCCAGGCTGCTGCAGGCTTTCCTTCTTGGAATCATCCTGCTCCCACTTCGCCTCA
TTTTGATTGGATTGCTTTTCTTATTATCTTGGCCATTTGCCGCCGCCTTCATAGCTTGCTGTCC
CGAGAAGCCGACTTACCCAGTGACCGACTGGAGACGGACAGTTACTCACTTGGTTTTGAGGTAT
CTGGGTTACGCCCTCTACTTTTCCATGGGATTTAAAGTGAGTGTGAAAGGAAAGCCTGCGAGCG
CCTTGGAAGCACCCATTTTTGTTGTCGCCCCTCATTCGTCCTTCTTTGATGGGATTGCCTGTAT
TGTGTCTGGACTGCCTTCGTTGGTGTCTCGGTATGAAACTGTCCAGATCCCTATGATTGGCAGT
AAGTACTTGAGAGGTCTCTTACGGGCCGTGCAGCCAGTGTTGGTGTCCCGTGTGGATCCGGATT
CCCGAAAGAACACAATAAATGAAATAATAAAGCGAGCGACCTCCGGAGGGGAGTGGCCCCAGAT
ACTAGTTTTCCCAGAAGGTACTTGTACTAATCGCTCCTGTTTGATTACTTTTAAACCAGGAGCC
TTCATTCCGGGAGTCCCCGTGCAGCCCATCCTCCTCAGATACCCCAACAAGCTGGATACTGTGA
CCTGGACATGGCAAGGATATACATTCATCCAGCTTTGTGTGCTGACTTTCTGCCAGCCCTTCAC
AAAGGTGGAAATCGAGTTTATGCCTGTTCAAGTACCAAGTGATGCAGAAAAAAACGATCCTGTT
CTTTTTGCCAATAGAGTCCGCAATTTAATGGCAGAAGCTCTGGGGATACCTGTGACAGATCATA
CCTATGAAGACTGCAGATTGATGATTTCAGCAGGACAGCTAACATTGCCCATGGAAGCTGGGTT
GGTGGAATTTACTAAAATTAGCCAGAAATTAAAATTGGATTGGGATGGCATCCGTAAGCATTTG
GATGAATATGCATCGATTGCACGTTCCTCAAAAGGTGGAAGAATTGGAATTGAAGAATTTGCTG
AGTATTTAAAATTACCTGTTTCCGATGTCTTGAGACAACTTTTTGCTCTCTTTGACAGGAACCG
CGATGGCACCATCGACTTCAGAGAGTACGTGATTGGCCTGGCCGTCTTGTGTCACCCGGCCAAC
ACAGAGGAGATCATCCAGGTGGCATTTAAGCTCTTTGATATTGATGAGGATGGCTATATAACGA
AGGAAGAGTTTTCTACCATTCTCCAGGCTTCCCTGGGGCTGCCCAACCTCGATGTTTCGGGTCT
CTTCAAGGAGATTTCCCAAGGAGACTCTGTTTCCTATGAGGAATTCAAACTTTTTGCCTTAAGA
CATCCAGAATATGCTAAGATATTTACAACGTACTTAGACCTCCAGACAAGCCATGTGTACTCAC
TGCCCAGGGAAGTCCACACAGCTGCCTCGGTTGCAAGTAATAAAGTCTGTCCTGAAGATCATGA
AGATAGGACCTCGGACAAAAAAGATGACTGAAAGCAGCACCCCATGAAGAATATTGAAAGTATA
AAAGCATTTATTGATAGTATTTCCAATGTGCATTTGAGGAATGATATTTAAAATGGGAAGCTTT
TTTATACACATGATAGGATTTCTTACTAAAAATGCTTTTATTAACTAGCAGATATGAAGTGGCA
TTCCTTCTCTTCTTTGTTATATTATGCTTTACTGGTTTGTTTGCCAGTGATAAATACTGTATAT
TTTTATGGATTTTCCAGTTTCATTAGCGTAACCAAATGAATACACTGGCAATCCTAGTTACTGG
TCAGCAATAATCAACACTGGAAAGAGTTTTAAAAAATACAAACACTGTTTAATCCACTTTCCTC
TAAAAACCAGTAATACTGTGTTTCTCTAATTCCTTTCCTTTCTGAAAATAAGAAGAGTCTGAGA
AGCATGGCAAAATGTTGTATCTTCGCACTCCACAGATTCATTTTTTCATCTAAATTTCGTTTCT
CAGATCACTGACTATGGGGAGGGGGGGCTCATTTTCTCTTTAACATGCATCTCTGTTGCAGATT
TCTTTCAACCCACTTCTAAGGAAATCATATCTTTTTACGTGATCTACAGGGTTAGGACTTGTTT
GAAAGCTGACTGCTGTGGCCAGAGGCTAGGTGGGAATCGCTGTGATTGAAGGGAACATTGATTG
TCTAATGAGAAAATGAATTGTTTGTCACAGAGTTGAATTTAATTTGGATTGGATGGTTCAGAAG
GTAGCACTTGTCTGATAAATAAATCAGATTGGTTCTATTTATGTGATAGTAGAATTAATATATT
TTATCATCCAAGAGGGAGTTTTATTTGTTAAGTGTCTTCTCCAATTTTAGAGCTTGTCTGAAAT
ATCTACATGGAAAGCAGGAAGCTTCCAAAGTGTCACTAAATGCCAGAGAATTGAAAAACCTACT
TTATTAATGCAAAACCACAGTTTATGCCCCAGGCAGGAATCCAATGGTCACATTTCTCCTCCAG
GTTAAGCAATAATTTCCCTGAAGTGCCATTTGTATTAGGTCTCATGTATGCATATTGCTAGTAT
CACTTATGTTTGAGATTTTGAACAAAGACCAATTTATTAAAATAATGTACATAAATAGTTTGTT
CTTATTCTGAATTCAGCCTTTGACACCAAACTCTTTGTTTTGGCTATGTTTCAGAATGTATTAA
TGATTCACCCCCCAAGCTATTTTTTAAAAGTCATTTTTGAAGCTGAGAAGTATCATGAGAATGT
CAGAGATTATATTTGATCAAGTATCACGATTTTAAACTAGTTTTTACATAGTAAGCAGTTAGTT
TTCTAAATTGATGGGTAAATATGTACTTGGGTAACTGAACACCAGAAAATTTCATCTATAAGTA
AATGTAATTATTTATTTCTTGTATGTTGAAAGCATTTAGAAAAGGTGTTAAGGTGAGTGGAAAC
AATTGCTTAGGTGAAATAATTACTAAATAATTTTAATAATGTCTGTCATATGTGATGAATGTAT
GTAATACTCAGGTACCATGATATGTTATCATGGAAAAAACCACCTAATTTTTATTAATCATTAA
AGAATGCATTATAAATTAAAGGCTTTCTTTCAGTAGGGCTTTTAAAAATGATCCTATCATTTTT
CTGTTTTAAAATAATGGTTTATGCTCATTACTTCCACTTTTGAATGTAATGTTTCTATTTTATG
ATTCTGTTGCTGAATAAACCAACTTGCCACAGTAAACATTCTTGACTTTGCCGTTTTGCCGCCA
TGTACTATGCTTCTTAATATCATGTGTGAGATGTGTTTGCACTTGGAGGAGTTGATGAGTCATT
TTATTTGCATTTTAACTTCATGAAATGTCAGACGTGGTAAAAACTCATTACCCCCAAGAAGCAA
TCCGTATTATTCATACAGAACTTGGCTTTGCAGGGGTTGGATGTGCCCCAACACAGGCTGTGGT
CAGCAGTCATCACAACTGGACAGGCCTCTCCTTGTGTCCCTCTTAACAGTGACTTCTTCCAGAA
ACACTTTTATCTTCTTAAGATTTAAAGTGAAGAATTAAGTTTATTAAATCTGTTAAATGCTCTG
TGGTTTTATATACTAATTTGGGG

hide sequence

RefSeq Acc Id:

XM_021721338 ⟹ XP_021577013

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	51,700,010 - 51,758,552 (-)	NCBI
SpeTri2.0	NW_004936475	7,830,544 - 7,889,437 (+)	NCBI

Sequence:

show sequence

AGCGCCTCGGGCTGGGACTCTTGAGGGGCTGCGGCTCGGTCTGGGCTGGGGTGCTGGCTCGCGA
GCTCGGCTTCCTTCTCTGCGCTCGGGTCCCACGCCCAGCTCGGCCATGAACCGGTGCTCCGAGG
CGGCGGCGGTGGCGGCCACCGTGCCAGGCTCCGGCGTCGGGGCCGCAGAGCATCGGCCGCCCAT
GGTGCCTCGCCAGGCGTCCTTCATCCCGCCGCCGGTGCCCAACCCCTTCGTGCAGCACACGGGG
CTCGGCACGGCCAGGCTGCTGCAGGCTTTCCTTCTTGGAATCATCCTGCTCCCACTTCGCCTCA
TTTTGATTGGATTGCTTTTCTTATTATCTTGGCCATTTGCCGCCGCCTTCATAGCTTGCTGTCC
CGAGAAGCCGACTTACCCAGTGACCGACTGGAGACGGACAGTTACTCACTTGGTTTTGAGGTAT
CTGGGTTACGCCCTCTACTTTTCCATGGGATTTAAAGTGAGTGTGAAAGGAAAGCCTGCGAGCG
CCTTGGAAGCACCCATTTTTGTTGTCGCCCCTCATTCGTCCTTCTTTGATGGGATTGCCTGTAT
TGTGTCTGGACTGCCTTCGTTGGTGTCTCGGTATGAAACTGTCCAGATCCCTATGATTGGCAGA
TACTGTGACCTGGACATGGCAAGGATATACATTCATCCAGCTTTGTGTGCTGACTTTCTGCCAG
CCCTTCACAAAGGTGGAAATCGAGCTAAAACAATACCTAGCAACAGATGTGGAAGTGCACGAGA
ACTGTACCCCTTTGTTCCGCACAAGTGTCAGCGGTCAAACTACATTACAACAGAGTTTATGCCT
GTTCAAGTACCAAGTGATGCAGAAAAAAACGATCCTGTTCTTTTTGCCAATAGAGTCCGCAATT
TAATGGCAGAAGCTCTGGGGATACCTGTGACAGATCATACCTATGAAGACTGCAGATTGATGAT
TTCAGCAGGACAGCTAACATTGCCCATGGAAGCTGGGTTGGTGGAATTTACTAAAATTAGCCAG
AAATTAAAATTGGATTGGGATGGCATCCGTAAGCATTTGGATGAATATGCATCGATTGCACGTT
CCTCAAAAGGTGGAAGAATTGGAATTGAAGAATTTGCTGAGTATTTAAAATTACCTGTTTCCGA
TGTCTTGAGACAACTTTTTGCTCTCTTTGACAGGAACCGCGATGGCACCATCGACTTCAGAGAG
TACGTGATTGGCCTGGCCGTCTTGTGTCACCCGGCCAACACAGAGGAGATCATCCAGGTGGCAT
TTAAGCTCTTTGATATTGATGAGGATGGCTATATAACGAAGGAAGAGTTTTCTACCATTCTCCA
GGCTTCCCTGGGGCTGCCCAACCTCGATGTTTCGGGTCTCTTCAAGGAGATTTCCCAAGGAGAC
TCTGTTTCCTATGAGGAATTCAAACTTTTTGCCTTAAGACATCCAGAATATGCTAAGATATTTA
CAACGTACTTAGACCTCCAGACAAGCCATGTGTACTCACTGCCCAGGGAAGTCCACACAGCTGC
CTCGGTTGCAAGTAATAAAGTCTGTCCTGAAGATCATGAAGATAGGACCTCGGACAAAAAAGAT
GACTGAAAGCAGCACCCCATGAAGAATATTGAAAGTATAAAAGCATTTATTGATAGTATTTCCA
ATGTGCATTTGAGGAATGATATTTAAAATGGGAAGCTTTTTTATACACATGATAGGATTTCTTA
CTAAAAATGCTTTTATTAACTAGCAGATATGAAGTGGCATTCCTTCTCTTCTTTGTTATATTAT
GCTTTACTGGTTTGTTTGCCAGTGATAAATACTGTATATTTTTATGGATTTTCCAGTTTCATTA
GCGTAACCAAATGAATACACTGGCAATCCTAGTTACTGGTCAGCAATAATCAACACTGGAAAGA
GTTTTAAAAAATACAAACACTGTTTAATCCACTTTCCTCTAAAAACCAGTAATACTGTGTTTCT
CTAATTCCTTTCCTTTCTGAAAATAAGAAGAGTCTGAGAAGCATGGCAAAATGTTGTATCTTCG
CACTCCACAGATTCATTTTTTCATCTAAATTTCGTTTCTCAGATCACTGACTATGGGGAGGGGG
GGCTCATTTTCTCTTTAACATGCATCTCTGTTGCAGATTTCTTTCAACCCACTTCTAAGGAAAT
CATATCTTTTTACGTGATCTACAGGGTTAGGACTTGTTTGAAAGCTGACTGCTGTGGCCAGAGG
CTAGGTGGGAATCGCTGTGATTGAAGGGAACATTGATTGTCTAATGAGAAAATGAATTGTTTGT
CACAGAGTTGAATTTAATTTGGATTGGATGGTTCAGAAGGTAGCACTTGTCTGATAAATAAATC
AGATTGGTTCTATTTATGTGATAGTAGAATTAATATATTTTATCATCCAAGAGGGAGTTTTATT
TGTTAAGTGTCTTCTCCAATTTTAGAGCTTGTCTGAAATATCTACATGGAAAGCAGGAAGCTTC
CAAAGTGTCACTAAATGCCAGAGAATTGAAAAACCTACTTTATTAATGCAAAACCACAGTTTAT
GCCCCAGGCAGGAATCCAATGGTCACATTTCTCCTCCAGGTTAAGCAATAATTTCCCTGAAGTG
CCATTTGTATTAGGTCTCATGTATGCATATTGCTAGTATCACTTATGTTTGAGATTTTGAACAA
AGACCAATTTATTAAAATAATGTACATAAATAGTTTGTTCTTATTCTGAATTCAGCCTTTGACA
CCAAACTCTTTGTTTTGGCTATGTTTCAGAATGTATTAATGATTCACCCCCCAAGCTATTTTTT
AAAAGTCATTTTTGAAGCTGAGAAGTATCATGAGAATGTCAGAGATTATATTTGATCAAGTATC
ACGATTTTAAACTAGTTTTTACATAGTAAGCAGTTAGTTTTCTAAATTGATGGGTAAATATGTA
CTTGGGTAACTGAACACCAGAAAATTTCATCTATAAGTAAATGTAATTATTTATTTCTTGTATG
TTGAAAGCATTTAGAAAAGGTGTTAAGGTGAGTGGAAACAATTGCTTAGGTGAAATAATTACTA
AATAATTTTAATAATGTCTGTCATATGTGATGAATGTATGTAATACTCAGGTACCATGATATGT
TATCATGGAAAAAACCACCTAATTTTTATTAATCATTAAAGAATGCATTATAAATTAAAGGCTT
TCTTTCAGTAGGGCTTTTAAAAATGATCCTATCATTTTTCTGTTTTAAAATAATGGTTTATGCT
CATTACTTCCACTTTTGAATGTAATGTTTCTATTTTATGATTCTGTTGCTGAATAAACCAACTT
GCCACAGTAAACATTCTTGACTTTGCCGTTTTGCCGCCATGTACTATGCTTCTTAATATCATGT
GTGAGATGTGTTTGCACTTGGAGGAGTTGATGAGTCATTTTATTTGCATTTTAACTTCATGAAA
TGTCAGACGTGGTAAAAACTCATTACCCCCAAGAAGCAATCCGTATTATTCATACAGAACTTGG
CTTTGCAGGGGTTGGATGTGCCCCAACACAGGCTGTGGTCAGCAGTCATCACAACTGGACAGGC
CTCTCCTTGTGTCCCTCTTAACAGTGACTTCTTCCAGAAACACTTTTATCTTCTTAAGATTTAA
AGTGAAGAATTAAGTTTATTAAATCTGTTAAATGCTCTGTGGTTTTATATACTAATTTGGGGA

hide sequence

RefSeq Acc Id:

XM_040279195 ⟹ XP_040135129

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	51,700,010 - 51,758,551 (-)	NCBI

RefSeq Acc Id:

XM_040279196 ⟹ XP_040135130

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	51,700,010 - 51,758,550 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005318243	(Get FASTA)	NCBI Sequence Viewer
	XP_021577010	(Get FASTA)	NCBI Sequence Viewer
	XP_021577013	(Get FASTA)	NCBI Sequence Viewer
	XP_040135129	(Get FASTA)	NCBI Sequence Viewer
	XP_040135130	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000010356.3
	ENSSTOP00000030852.1
GenBank Protein	KAG3257268	(Get FASTA)	NCBI Sequence Viewer
	KAG3257269	(Get FASTA)	NCBI Sequence Viewer
	KAG3257270	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005318243 ⟸ XM_005318186
- Peptide Label:	isoform X2
- UniProtKB:	A0A287DB98 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNRCSEAAAVAATVPGSGVGAAEHRPPMVPRQASFIPPPVPNPFVQHTGLGTARLLQAFLLGII LLPLRLILIGLLFLLSWPFAAAFIACCPEKPTYPVTDWRRTVTHLVLRYLGYALYFSMGFKVSV KGKPASALEAPIFVVAPHSSFFDGIACIVSGLPSLVSRYETVQIPMIGSLLRAVQPVLVSRVDP DSRKNTINEIIKRATSGGEWPQILVFPEGTCTNRSCLITFKPGAFIPGVPVQPILLRYPNKLDT VTWTWQGYTFIQLCVLTFCQPFTKVEIEFMPVQVPSDAEKNDPVLFANRVRNLMAEALGIPVTD HTYEDCRLMISAGQLTLPMEAGLVEFTKISQKLKLDWDGIRKHLDEYASIARSSKGGRIGIEEF AEYLKLPVSDVLRQLFALFDRNRDGTIDFREYVIGLAVLCHPANTEEIIQVAFKLFDIDEDGYI TKEEFSTILQASLGLPNLDVSGLFKEISQGDSVSYEEFKLFALRHPEYAKIFTTYLDLQTSHVY SLPREVHTAASVASNKVCPEDHEDRTSDKKDD hide sequence

RefSeq Acc Id:

XP_021577013 ⟸ XM_021721338

- Peptide Label:

isoform X5

- Sequence:

show sequence

MNRCSEAAAVAATVPGSGVGAAEHRPPMVPRQASFIPPPVPNPFVQHTGLGTARLLQAFLLGII
LLPLRLILIGLLFLLSWPFAAAFIACCPEKPTYPVTDWRRTVTHLVLRYLGYALYFSMGFKVSV
KGKPASALEAPIFVVAPHSSFFDGIACIVSGLPSLVSRYETVQIPMIGRYCDLDMARIYIHPAL
CADFLPALHKGGNRAKTIPSNRCGSARELYPFVPHKCQRSNYITTEFMPVQVPSDAEKNDPVLF
ANRVRNLMAEALGIPVTDHTYEDCRLMISAGQLTLPMEAGLVEFTKISQKLKLDWDGIRKHLDE
YASIARSSKGGRIGIEEFAEYLKLPVSDVLRQLFALFDRNRDGTIDFREYVIGLAVLCHPANTE
EIIQVAFKLFDIDEDGYITKEEFSTILQASLGLPNLDVSGLFKEISQGDSVSYEEFKLFALRHP
EYAKIFTTYLDLQTSHVYSLPREVHTAASVASNKVCPEDHEDRTSDKKDD

hide sequence

RefSeq Acc Id:

XP_021577010 ⟸ XM_021721335

- Peptide Label:

isoform X1

- Sequence:

show sequence

MNRCSEAAAVAATVPGSGVGAAEHRPPMVPRQASFIPPPVPNPFVQHTGLGTARLLQAFLLGII
LLPLRLILIGLLFLLSWPFAAAFIACCPEKPTYPVTDWRRTVTHLVLRYLGYALYFSMGFKVSV
KGKPASALEAPIFVVAPHSSFFDGIACIVSGLPSLVSRYETVQIPMIGSKYLRGLLRAVQPVLV
SRVDPDSRKNTINEIIKRATSGGEWPQILVFPEGTCTNRSCLITFKPGAFIPGVPVQPILLRYP
NKLDTVTWTWQGYTFIQLCVLTFCQPFTKVEIEFMPVQVPSDAEKNDPVLFANRVRNLMAEALG
IPVTDHTYEDCRLMISAGQLTLPMEAGLVEFTKISQKLKLDWDGIRKHLDEYASIARSSKGGRI
GIEEFAEYLKLPVSDVLRQLFALFDRNRDGTIDFREYVIGLAVLCHPANTEEIIQVAFKLFDID
EDGYITKEEFSTILQASLGLPNLDVSGLFKEISQGDSVSYEEFKLFALRHPEYAKIFTTYLDLQ
TSHVYSLPREVHTAASVASNKVCPEDHEDRTSDKKDD

hide sequence

RefSeq Acc Id:	XP_040135129 ⟸ XM_040279195
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040135130 ⟸ XM_040279196
- Peptide Label:	isoform X4
- UniProtKB:	I3MHI8 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000030852 ⟸ ENSSTOT00000036200

RefSeq Acc Id:

ENSSTOP00000010356 ⟸ ENSSTOT00000011538

Protein Domains

EF-hand

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000011536	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000011538.3	UniProtKB/TrEMBL
	ENSSTOT00000036200.1	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
	LPCAT1-like	UniProtKB/TrEMBL
	Plipid/glycerol_acylTrfase	UniProtKB/TrEMBL
NCBI Gene	Lpcat2	ENTREZGENE
PANTHER	LYSOPHOSPHATIDYLCHOLINE ACYLTRANSFERASE 2	UniProtKB/TrEMBL
	PHOSPHOLIPID ACYLTRANSFERASE	UniProtKB/TrEMBL
Pfam	Acyltransferase	UniProtKB/TrEMBL
	EF-hand_5	UniProtKB/TrEMBL
	EF-hand_7	UniProtKB/TrEMBL
PRINTS	RECOVERIN	UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
SMART	EFh	UniProtKB/TrEMBL
	PlsC	UniProtKB/TrEMBL
Superfamily-SCOP	Glycerol-3-phosphate (1)-acyltransferase	UniProtKB/TrEMBL
	SSF47473	UniProtKB/TrEMBL
UniProt	A0A287DB98	ENTREZGENE, UniProtKB/TrEMBL
	I3MHI8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD