Col5a2 (collagen type V alpha 2 chain) - Rat Genome Database

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Gene: Col5a2 (collagen type V alpha 2 chain) Ictidomys tridecemlineatus
Analyze
Symbol: Col5a2
Name: collagen type V alpha 2 chain
RGD ID: 12496650
Description: ENCODES a protein that exhibits SMAD binding (ortholog); INVOLVED IN cellular response to amino acid stimulus (ortholog); collagen fibril organization (ortholog); eye morphogenesis (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH aortic disease (ortholog); atrial heart septal defect (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2B (ortholog); FOUND IN collagen trimer (ortholog); collagen type V trimer (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen alpha-2(V) chain
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303147,964,999 - 148,098,596 (-)NCBI
SpeTri2.0NW_0049365068,739,475 - 8,873,073 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function
SMAD binding  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Col5a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303147,964,999 - 148,098,596 (-)NCBI
SpeTri2.0NW_0049365068,739,475 - 8,873,073 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL5A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2189,031,898 - 189,225,312 (-)EnsemblGRCh38hg38GRCh38
GRCh382189,031,898 - 189,225,301 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372189,896,624 - 190,044,487 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362189,604,886 - 189,752,850 (-)NCBINCBI36hg18NCBI36
Build 342189,722,746 - 189,869,994NCBI
Celera2183,491,426 - 183,639,662 (-)NCBI
Cytogenetic Map2q32.2NCBI
HuRef2181,756,174 - 181,904,275 (-)NCBIHuRef
CHM1_12189,902,544 - 190,050,507 (-)NCBICHM1_1
Col5a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39145,413,491 - 45,542,442 (-)NCBIGRCm39mm39
GRCm39 Ensembl145,413,481 - 45,542,442 (-)Ensembl
GRCm38145,374,331 - 45,503,282 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl145,374,321 - 45,503,282 (-)EnsemblGRCm38mm10GRCm38
MGSCv37145,431,176 - 45,560,127 (-)NCBIGRCm37mm9NCBIm37
MGSCv36145,318,877 - 45,447,828 (-)NCBImm8
Celera145,675,438 - 45,811,971 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
Col5a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2947,448,736 - 47,598,396 (-)NCBI
Rnor_6.0 Ensembl952,092,511 - 52,238,564 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0952,091,088 - 52,238,735 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0951,757,496 - 51,906,270 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4944,374,113 - 44,525,086 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1944,376,901 - 44,388,758 (-)NCBI
Celera945,135,653 - 45,279,153 (-)NCBICelera
Cytogenetic Map9q22NCBI
Col5a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554039,562,401 - 9,703,828 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554039,562,401 - 9,703,828 (+)NCBIChiLan1.0ChiLan1.0
COL5A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B194,259,316 - 194,407,237 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B194,259,316 - 194,407,237 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B76,339,756 - 76,487,133 (-)NCBIMhudiblu_PPA_v0panPan3
COL5A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13630,538,863 - 30,677,450 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3630,540,229 - 30,691,564 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3630,444,268 - 30,596,870 (-)NCBI
ROS_Cfam_1.03630,769,002 - 30,921,527 (-)NCBI
UMICH_Zoey_3.13630,829,323 - 30,981,791 (-)NCBI
UNSW_CanFamBas_1.03630,765,542 - 30,917,922 (-)NCBI
UU_Cfam_GSD_1.03630,934,376 - 31,087,519 (-)NCBI
COL5A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1593,611,856 - 93,981,110 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11593,611,856 - 93,981,131 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215104,122,882 - 104,272,687 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COL5A2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11074,509,704 - 74,659,251 (-)NCBI
ChlSab1.1 Ensembl1074,507,772 - 74,659,366 (-)Ensembl
Col5a2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248991,035,797 - 1,175,394 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005324386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005324386   ⟹   XP_005324443
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303147,964,999 - 148,098,596 (-)NCBI
SpeTri2.0NW_0049365068,739,475 - 8,873,073 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005324443 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005324443   ⟸   XM_005324386
- Sequence:
Protein Domains
Fibrillar collagen NC1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015795 UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000014156 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015816 UniProtKB/TrEMBL
InterPro Collagen UniProtKB/TrEMBL
  Fib_collagen_C UniProtKB/TrEMBL
NCBI Gene Col5a2 ENTREZGENE
Pfam COLFI UniProtKB/TrEMBL
  Collagen UniProtKB/TrEMBL
PROSITE NC1_FIB UniProtKB/TrEMBL
SMART COLFI UniProtKB/TrEMBL
UniProt I3MQE7_ICTTR UniProtKB/TrEMBL