LOC101971097 (EF-hand calcium-binding domain-containing protein 1-like) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: LOC101971097 (EF-hand calcium-binding domain-containing protein 1-like) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101971097
Name: EF-hand calcium-binding domain-containing protein 1-like
RGD ID: 12495009
Description: ENCODES a protein that exhibits calcium ion binding (inferred); metal ion binding (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511831,515,581 - 31,531,531 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049368031,268,399 - 1,281,758 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence


RefSeq Acc Id: XM_040291499   ⟹   XP_040147433
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511831,516,770 - 31,531,530 (-)NCBI
RefSeq Acc Id: XM_040291501   ⟹   XP_040147435
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511831,515,581 - 31,531,531 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040147433 (Get FASTA)   NCBI Sequence Viewer  
  XP_040147435 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018512.2
  ENSSTOP00000018564.2
GenBank Protein KAG3277589 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040147435   ⟸   XM_040291501
- Peptide Label: isoform X2
- UniProtKB: I3N2B6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040147433   ⟸   XM_040291499
- Peptide Label: isoform X1
- UniProtKB: I3N2B6 (UniProtKB/TrEMBL)
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028513 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000023511.2 UniProtKB/TrEMBL
  ENSSTOT00000024664.2 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  Recoverin UniProtKB/TrEMBL
NCBI Gene LOC101971097 ENTREZGENE
PANTHER PTHR23055 UniProtKB/TrEMBL
  RIKEN CDNA 1700109H08 GENE UniProtKB/TrEMBL
Pfam EF-hand_5 UniProtKB/TrEMBL
  EF-hand_6 UniProtKB/TrEMBL
  EF-hand_7 UniProtKB/TrEMBL
PRINTS RECOVERIN UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt I3N2B6 ENTREZGENE, UniProtKB/TrEMBL
  I3N2G8_ICTTR UniProtKB/TrEMBL