Tusc3 (tumor suppressor candidate 3) - Rat Genome Database

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Gene: Tusc3 (tumor suppressor candidate 3) Ictidomys tridecemlineatus
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Symbol: Tusc3
Name: tumor suppressor candidate 3
RGD ID: 12492987
Description: ENCODES a protein that exhibits magnesium ion transmembrane transporter activity (ortholog); INVOLVED IN cognition (ortholog); magnesium ion transport (ortholog); protein N-linked glycosylation via asparagine (ortholog); ASSOCIATED WITH congenital disorder of glycosylation (ortholog); Experimental Liver Cirrhosis (ortholog); intellectual disability (ortholog); FOUND IN oligosaccharyltransferase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: tumor suppressor candidate 3, transcript variant X1; tumor suppressor candidate 3, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494340,062,084 - 40,318,484 (-)NCBI
SpeTri2.0NW_0049365734,823,939 - 4,977,997 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Tusc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494340,062,084 - 40,318,484 (-)NCBI
SpeTri2.0NW_0049365734,823,939 - 4,977,997 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TUSC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl815,417,215 - 15,766,649 (+)EnsemblGRCh38hg38GRCh38
GRCh38815,540,087 - 15,766,649 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37815,397,596 - 15,624,158 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36815,442,101 - 15,666,366 (+)NCBINCBI36hg18NCBI36
Celera814,361,735 - 14,585,988 (+)NCBI
Cytogenetic Map8p22NCBI
HuRef813,941,421 - 14,168,441 (+)NCBIHuRef
CHM1_1815,599,058 - 15,826,084 (+)NCBICHM1_1
Tusc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39839,472,505 - 39,620,091 (+)NCBIGRCm39mm39
GRCm39 Ensembl839,472,999 - 39,619,367 (+)Ensembl
GRCm38839,005,351 - 39,167,050 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl839,005,845 - 39,165,114 (+)EnsemblGRCm38mm10GRCm38
MGSCv37840,068,921 - 40,193,932 (+)NCBIGRCm37mm9NCBIm37
MGSCv37840,242,614 - 40,250,468 (+)NCBIGRCm37mm9NCBIm37
MGSCv36840,656,077 - 40,665,143 (+)NCBImm8
Celera841,719,343 - 41,855,476 (+)NCBICelera
Cytogenetic Map8A4NCBI
Tusc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21653,196,195 - 53,345,241 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl1656,247,659 - 56,396,502 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01656,248,125 - 56,396,491 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01655,949,774 - 56,097,482 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41656,760,904 - 56,929,685 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11656,760,980 - 56,929,760 (-)NCBI
Celera1651,081,032 - 51,229,180 (-)NCBICelera
Cytogenetic Map16q12.1NCBI
Tusc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554631,634,238 - 1,848,187 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554631,633,776 - 1,848,187 (-)NCBIChiLan1.0ChiLan1.0
TUSC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1811,603,037 - 11,745,152 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl811,603,037 - 11,745,152 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0814,795,921 - 14,988,566 (+)NCBIMhudiblu_PPA_v0panPan3
TUSC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11638,798,764 - 39,086,508 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1638,862,591 - 39,084,458 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1639,270,320 - 39,564,379 (+)NCBI
ROS_Cfam_1.01640,842,985 - 41,131,133 (+)NCBI
UMICH_Zoey_3.11638,937,567 - 39,219,630 (+)NCBI
UNSW_CanFamBas_1.01639,494,984 - 39,776,798 (+)NCBI
UU_Cfam_GSD_1.01639,618,352 - 39,900,306 (+)NCBI
TUSC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl173,312,684 - 3,507,729 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1173,312,684 - 3,507,372 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2173,407,540 - 3,578,063 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TUSC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1813,669,079 - 13,875,104 (+)NCBI
ChlSab1.1 Ensembl813,669,097 - 13,874,472 (+)Ensembl
Vero_WHO_p1.0NW_02366605228,435,988 - 28,643,097 (-)NCBI
Tusc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248391,125,643 - 1,453,961 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021730170   ⟹   XP_021585845
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494340,164,439 - 40,318,483 (-)NCBI
SpeTri2.0NW_0049365734,823,940 - 4,977,997 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021730171   ⟹   XP_021585846
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365734,823,939 - 4,977,997 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040268019   ⟹   XP_040123953
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494340,062,084 - 40,318,483 (-)NCBI
RefSeq Acc Id: XM_040268024   ⟹   XP_040123958
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494340,164,439 - 40,318,483 (-)NCBI
RefSeq Acc Id: XM_040268029   ⟹   XP_040123963
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494340,062,084 - 40,318,483 (-)NCBI
RefSeq Acc Id: XM_040268032   ⟹   XP_040123966
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494340,062,084 - 40,318,483 (-)NCBI
RefSeq Acc Id: XM_040268038   ⟹   XP_040123972
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494340,062,084 - 40,318,484 (-)NCBI
RefSeq Acc Id: XM_040268043   ⟹   XP_040123977
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494340,188,271 - 40,318,483 (-)NCBI
RefSeq Acc Id: XR_005725915
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494340,188,271 - 40,318,483 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_021585846   ⟸   XM_021730171
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021585845   ⟸   XM_021730170
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_040123972   ⟸   XM_040268038
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040123966   ⟸   XM_040268032
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040123953   ⟸   XM_040268019
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040123963   ⟸   XM_040268029
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040123958   ⟸   XM_040268024
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040123977   ⟸   XM_040268043
- Peptide Label: isoform X6


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010933 ENTREZGENE
Ensembl Protein ENSSTOP00000009804 ENTREZGENE
NCBI Gene Tusc3 ENTREZGENE