Il20ra (interleukin 20 receptor subunit alpha) - Rat Genome Database

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Gene: Il20ra (interleukin 20 receptor subunit alpha) Ictidomys tridecemlineatus
Analyze
Symbol: Il20ra
Name: interleukin 20 receptor subunit alpha
RGD ID: 12492532
Description: ENCODES a protein that exhibits cytokine receptor activity (inferred); interleukin-20 binding (inferred); INVOLVED IN cytokine-mediated signaling pathway (ortholog); positive regulation of intrinsic apoptotic signaling pathway (ortholog); regulation of bone resorption (ortholog); ASSOCIATED WITH Familial Behcet-Like Autoinflammatory Syndrome (ortholog); genetic disease (ortholog); immunodeficiency 27A (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: interleukin 20 receptor subunit alpha, transcript variant X1; interleukin 20 receptor subunit alpha, transcript variant X2; interleukin-20 receptor subunit alpha
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946124,603,795 - 124,641,724 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365604,384,512 - 4,420,567 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365604,384,126 - 4,397,971 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Il20ra
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946124,603,795 - 124,641,724 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365604,384,512 - 4,420,567 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365604,384,126 - 4,397,971 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL20RA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386136,999,971 - 137,044,965 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6136,999,971 - 137,045,180 (-)EnsemblGRCh38hg38GRCh38
GRCh376137,321,108 - 137,366,102 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366137,362,801 - 137,407,991 (-)NCBINCBI36Build 36hg18NCBI36
Build 346137,362,800 - 137,407,991NCBI
Celera6138,061,119 - 138,106,308 (-)NCBICelera
Cytogenetic Map6q23.3NCBI
HuRef6134,884,797 - 134,930,028 (-)NCBIHuRef
CHM1_16137,583,198 - 137,628,559 (-)NCBICHM1_1
T2T-CHM13v2.06138,187,753 - 138,232,746 (-)NCBIT2T-CHM13v2.0
Il20ra
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391019,587,421 - 19,635,801 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1019,588,318 - 19,635,801 (+)EnsemblGRCm39 Ensembl
GRCm381019,711,673 - 19,760,053 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1019,712,570 - 19,760,053 (+)EnsemblGRCm38mm10GRCm38
MGSCv371019,432,393 - 19,479,859 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361019,402,003 - 19,449,469 (+)NCBIMGSCv36mm8
Celera1019,610,651 - 19,651,717 (+)NCBICelera
Cytogenetic Map10A3NCBI
cM Map108.76NCBI
Il20ra
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8116,243,683 - 16,313,229 (+)NCBIGRCr8
mRatBN7.2114,424,215 - 14,494,226 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl114,451,228 - 14,493,602 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx114,217,003 - 14,259,077 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0120,218,869 - 20,260,926 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0114,431,368 - 14,473,751 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0115,180,328 - 15,222,785 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl115,180,328 - 15,222,785 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0116,728,324 - 16,771,424 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4114,965,655 - 15,009,954 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1114,965,766 - 15,009,633 (+)NCBI
Celera112,894,260 - 12,936,361 (+)NCBICelera
Cytogenetic Map1p12NCBI
Il20ra
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543622,281,713 - 22,326,229 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543622,281,422 - 22,323,242 (+)NCBIChiLan1.0ChiLan1.0
IL20RA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25156,968,584 - 157,011,953 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16154,864,742 - 154,910,759 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06134,762,355 - 134,805,937 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16138,849,153 - 138,893,123 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6138,848,400 - 138,866,098 (-)Ensemblpanpan1.1panPan2
IL20RA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1129,506,582 - 29,545,882 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl129,506,689 - 29,546,006 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha130,389,125 - 30,428,393 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0129,667,822 - 29,707,108 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl129,667,831 - 29,707,365 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1129,552,555 - 29,591,759 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0129,437,765 - 29,477,041 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0129,736,859 - 29,776,167 (-)NCBIUU_Cfam_GSD_1.0
IL20RA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl127,137,558 - 27,172,720 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1127,137,545 - 27,172,341 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2130,531,023 - 30,561,936 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IL20RA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11336,351,873 - 36,397,300 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1336,352,018 - 36,397,302 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660408,540,875 - 8,586,646 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Il20ra
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624886741,346 - 780,599 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624886741,022 - 781,041 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000016259   ⟹   ENSSTOP00000014556
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365604,384,512 - 4,420,567 (-)Ensembl
RefSeq Acc Id: XM_005329800   ⟹   XP_005329857
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946124,603,795 - 124,618,710 (-)NCBI
SpeTri2.0NW_0049365604,384,126 - 4,397,926 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005329802   ⟹   XP_005329859
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946124,603,795 - 124,641,724 (-)NCBI
SpeTri2.0NW_0049365604,384,126 - 4,397,971 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040283383   ⟹   XP_040139317
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946124,603,795 - 124,641,724 (-)NCBI
RefSeq Acc Id: XM_040283384   ⟹   XP_040139318
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946124,603,795 - 124,614,905 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005329857 (Get FASTA)   NCBI Sequence Viewer  
  XP_005329859 (Get FASTA)   NCBI Sequence Viewer  
  XP_040139317 (Get FASTA)   NCBI Sequence Viewer  
  XP_040139318 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014556.3
GenBank Protein KAG3290341 (Get FASTA)   NCBI Sequence Viewer  
  KAG3290342 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005329859   ⟸   XM_005329802
- Peptide Label: isoform X1
- UniProtKB: I3MR76 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005329857   ⟸   XM_005329800
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_040139317   ⟸   XM_040283383
- Peptide Label: isoform X2
- UniProtKB: I3MR76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040139318   ⟸   XM_040283384
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000014556   ⟸   ENSSTOT00000016259
Protein Domains
Fibronectin type-III


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016256 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000016259.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Interferon/interleukin_rcp_dom UniProtKB/TrEMBL
NCBI Gene Il20ra ENTREZGENE
PANTHER INTERFERON/INTERLEUKIN RECEPTOR UniProtKB/TrEMBL
  INTERLEUKIN-20 RECEPTOR SUBUNIT ALPHA UniProtKB/TrEMBL
Pfam Interfer-bind UniProtKB/TrEMBL
  Tissue_fac UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
UniProt I3MR76 ENTREZGENE, UniProtKB/TrEMBL