Lypd1 (LY6/PLAUR domain containing 1) - Rat Genome Database

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Gene: Lypd1 (LY6/PLAUR domain containing 1) Ictidomys tridecemlineatus
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Symbol: Lypd1
Name: LY6/PLAUR domain containing 1
RGD ID: 12492323
Description: ENCODES a protein that exhibits acetylcholine receptor binding (ortholog); acetylcholine receptor inhibitor activity (ortholog); INVOLVED IN acetylcholine receptor signaling pathway (ortholog); behavioral fear response (ortholog); negative regulation of protein localization to plasma membrane (ortholog); FOUND IN membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LY6/PLAUR domain containing 1, transcript variant X1; LY6/PLAUR domain containing 1, transcript variant X2; ly6/PLAUR domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530385,418,630 - 85,457,503 (+)NCBI
SpeTri2.0NW_00493646956,163,531 - 56,199,067 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
Lypd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530385,418,630 - 85,457,503 (+)NCBI
SpeTri2.0NW_00493646956,163,531 - 56,199,067 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LYPD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2132,643,286 - 132,671,579 (-)EnsemblGRCh38hg38GRCh38
GRCh382132,643,286 - 132,671,526 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372133,400,859 - 133,429,099 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362133,118,807 - 133,145,540 (-)NCBINCBI36hg18NCBI36
Build 342133,236,157 - 133,261,510NCBI
Celera2127,117,594 - 127,144,318 (-)NCBI
Cytogenetic Map2q21.2NCBI
HuRef2125,395,959 - 125,422,502 (-)NCBIHuRef
CHM1_12133,407,570 - 133,434,311 (-)NCBICHM1_1
Lypd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391125,795,359 - 125,841,134 (-)NCBIGRCm39mm39
GRCm39 Ensembl1125,795,359 - 125,840,838 (-)Ensembl
GRCm381125,867,622 - 125,913,175 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1125,867,622 - 125,913,101 (-)EnsemblGRCm38mm10GRCm38
MGSCv371127,768,616 - 127,808,791 (-)NCBIGRCm37mm9NCBIm37
MGSCv361127,699,589 - 127,739,760 (-)NCBImm8
Celera1128,530,811 - 128,571,285 (-)NCBICelera
Cytogenetic Map1E3NCBI
Lypd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21337,326,459 - 37,368,515 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl1342,219,887 - 42,263,024 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01342,219,884 - 42,263,024 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01347,327,522 - 47,368,232 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41338,399,429 - 38,441,498 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1337,122,178 - 37,163,486 (-)NCBICelera
Cytogenetic Map13q12NCBI
Lypd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955440236,012 - 266,028 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955440236,012 - 266,028 (-)NCBIChiLan1.0ChiLan1.0
LYPD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B136,738,362 - 136,769,816 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B136,738,362 - 136,769,150 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B27,170,199 - 27,201,789 (+)NCBIMhudiblu_PPA_v0panPan3
LYPD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11935,586,096 - 35,630,468 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1935,586,283 - 35,630,160 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1935,815,887 - 35,859,926 (-)NCBI
ROS_Cfam_1.01937,021,072 - 37,065,212 (-)NCBI
UMICH_Zoey_3.11935,669,400 - 35,713,519 (-)NCBI
UNSW_CanFamBas_1.01935,829,430 - 35,873,495 (-)NCBI
UU_Cfam_GSD_1.01937,048,312 - 37,092,444 (-)NCBI
LYPD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1519,522,828 - 19,567,890 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11519,522,045 - 19,559,819 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21522,097,652 - 22,135,312 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LYPD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11016,910,145 - 16,941,915 (-)NCBI
Vero_WHO_p1.0NW_0236660615,577,790 - 5,609,350 (+)NCBI
Lypd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473232,045,585 - 32,075,013 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005315935   ⟹   XP_005315992
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530385,419,352 - 85,457,503 (+)NCBI
SpeTri2.0NW_00493646956,168,734 - 56,198,395 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021722205   ⟹   XP_021577880
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530385,418,630 - 85,457,503 (+)NCBI
SpeTri2.0NW_00493646956,163,531 - 56,199,067 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040294090   ⟹   XP_040150024
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530385,418,679 - 85,457,503 (+)NCBI
RefSeq Acc Id: XM_040294092   ⟹   XP_040150026
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530385,419,146 - 85,457,503 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_005315992   ⟸   XM_005315935
- Peptide Label: isoform X2
- UniProtKB: I3MY57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021577880   ⟸   XM_021722205
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040150024   ⟸   XM_040294090
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040150026   ⟸   XM_040294092
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025677 ENTREZGENE
Ensembl Protein ENSSTOP00000017053 ENTREZGENE
NCBI Gene Lypd1 ENTREZGENE
UniProt I3MY57 ENTREZGENE