LOC101972068 (cytochrome c oxidase assembly factor 3 homolog, mitochondrial) - Rat Genome Database

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Gene: LOC101972068 (cytochrome c oxidase assembly factor 3 homolog, mitochondrial) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101972068 (Ensembl: COA3)
Name: cytochrome c oxidase assembly factor 3 homolog, mitochondrial
RGD ID: 12492080
Description: INVOLVED IN mitochondrial cytochrome c oxidase assembly (inferred); positive regulation of mitochondrial translation (inferred); ASSOCIATED WITH cytochrome-c oxidase deficiency disease (ortholog); genetic disease (ortholog); mitochondrial complex IV deficiency nuclear type 14 (ortholog); FOUND IN membrane (inferred); mitochondrial inner membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560219,565,587 - 19,566,477 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649017,508,663 - 17,509,582 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649017,508,663 - 17,509,538 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC101972068
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560219,565,587 - 19,566,477 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649017,508,663 - 17,509,582 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649017,508,663 - 17,509,538 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381742,797,625 - 42,798,704 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1742,795,147 - 42,798,704 (-)EnsemblGRCh38hg38GRCh38
GRCh371740,949,643 - 40,950,722 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361738,203,178 - 38,204,230 (-)NCBINCBI36Build 36hg18NCBI36
Celera1737,605,639 - 37,606,691 (-)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1736,714,024 - 36,715,131 (-)NCBIHuRef
CHM1_11741,185,222 - 41,186,329 (-)NCBICHM1_1
T2T-CHM13v2.01743,654,765 - 43,655,844 (-)NCBIT2T-CHM13v2.0
Coa3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911101,168,796 - 101,169,774 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11101,168,794 - 101,169,940 (-)EnsemblGRCm39 Ensembl
GRCm3811101,277,970 - 101,278,948 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11101,277,968 - 101,279,114 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711101,139,284 - 101,140,262 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611101,094,060 - 101,095,038 (-)NCBIMGSCv36mm8
MGSCv3611102,057,055 - 102,058,033 (-)NCBIMGSCv36mm8
Cytogenetic Map11DNCBI
cM Map1164.56NCBI
Coa3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81086,720,454 - 86,721,435 (-)NCBIGRCr8
mRatBN7.21086,220,192 - 86,221,173 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1086,220,194 - 86,221,178 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1091,257,936 - 91,258,917 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01090,732,467 - 90,733,448 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01086,125,635 - 86,126,616 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01089,198,750 - 89,199,731 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1089,198,749 - 89,199,736 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01088,997,136 - 88,998,117 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41090,306,762 - 90,307,743 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1084,938,199 - 84,939,180 (-)NCBICelera
Cytogenetic Map10q31NCBI
LOC102025968
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545116,607,895 - 16,608,647 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545116,607,495 - 16,608,732 (-)NCBIChiLan1.0ChiLan1.0
LOC100970874
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21922,187,092 - 22,188,139 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11724,077,218 - 24,078,265 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01714,519,214 - 14,520,292 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11714,744,405 - 14,745,490 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1714,744,405 - 14,745,490 (+)Ensemblpanpan1.1panPan2
CCDC56
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1920,223,096 - 20,224,178 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl920,223,096 - 20,224,178 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha919,684,425 - 19,685,507 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0920,941,492 - 20,942,574 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl920,941,492 - 20,942,574 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1919,726,385 - 19,727,467 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0919,992,626 - 19,993,708 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0920,095,324 - 20,096,406 (+)NCBIUU_Cfam_GSD_1.0
LOC100518575
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1220,062,826 - 20,063,980 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11220,062,831 - 20,063,984 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21220,277,783 - 20,278,913 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11663,485,730 - 63,487,076 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607734,285,274 - 34,286,353 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101712798
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247951,414,727 - 1,415,483 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247951,414,533 - 1,415,828 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005321896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000028845   ⟹   ENSSTOP00000017236
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493649017,508,663 - 17,509,582 (-)Ensembl
RefSeq Acc Id: XM_005321896   ⟹   XP_005321953
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560219,565,587 - 19,566,477 (+)NCBI
SpeTri2.0NW_00493649017,508,663 - 17,509,538 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005321953 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000017236.1
GenBank Protein KAG3268877 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005321953   ⟸   XM_005321896
- UniProtKB: I3MYP0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000017236   ⟸   ENSSTOT00000028845
Protein Domains
Cytochrome c oxidase assembly factor 3 mitochondrial


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020760 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028845.2 UniProtKB/TrEMBL
InterPro Coa3 UniProtKB/TrEMBL
  Coa3_cc UniProtKB/TrEMBL
NCBI Gene LOC101972068 ENTREZGENE
PANTHER CYTOCHROME C OXIDASE ASSEMBLY FACTOR 3 HOMOLOG, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR15642 UniProtKB/TrEMBL
Pfam Coiled-coil_56 UniProtKB/TrEMBL
UniProt I3MYP0 ENTREZGENE, UniProtKB/TrEMBL