LOC101959727 (cytochrome b-c1 complex subunit Rieske, mitochondrial) - Rat Genome Database

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Gene: LOC101959727 (cytochrome b-c1 complex subunit Rieske, mitochondrial) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101959727
Name: cytochrome b-c1 complex subunit Rieske, mitochondrial
RGD ID: 12491210
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN mitochondrial respiratory chain complex III assembly (ortholog); respiratory electron transport chain (ortholog); response to hormone (ortholog); ASSOCIATED WITH cardiomyopathy (ortholog); Experimental Seizures (ortholog); genetic disease (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrial respiratory chain complex III (ortholog); mitochondrial respiratory chain complex IV (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093495,595,723 - 5,600,927 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365706,044,969 - 6,051,046 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101959727
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093495,595,723 - 5,600,927 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365706,044,969 - 6,051,046 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UQCRFS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381929,205,320 - 29,213,151 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1929,205,320 - 29,213,151 (-)EnsemblGRCh38hg38GRCh38
GRCh371929,696,227 - 29,704,058 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361934,390,007 - 34,395,954 (-)NCBINCBI36Build 36hg18NCBI36
Build 341934,390,006 - 34,395,954NCBI
Celera1926,400,450 - 26,406,405 (-)NCBICelera
Cytogenetic Map19q12NCBI
HuRef1926,215,131 - 26,221,101 (-)NCBIHuRef
CHM1_11929,699,125 - 29,705,094 (-)NCBICHM1_1
T2T-CHM13v2.01931,736,436 - 31,744,253 (-)NCBIT2T-CHM13v2.0
Uqcrfs1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391330,724,295 - 30,729,299 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1330,724,291 - 30,729,345 (-)EnsemblGRCm39 Ensembl
GRCm381330,540,312 - 30,545,316 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1330,540,308 - 30,545,362 (-)EnsemblGRCm38mm10GRCm38
MGSCv371330,632,181 - 30,637,185 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361330,547,777 - 30,552,785 (-)NCBIMGSCv36mm8
Celera1330,754,531 - 30,759,562 (-)NCBICelera
Cytogenetic Map13A3.2NCBI
cM Map1313.23NCBI
Uqcrfs1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81734,173,787 - 34,190,952 (+)NCBIGRCr8
mRatBN7.21733,977,908 - 33,982,478 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1733,977,921 - 33,982,479 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1733,816,701 - 33,820,962 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01735,420,584 - 35,424,845 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01733,812,512 - 33,816,773 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01735,677,984 - 35,682,262 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1735,677,984 - 35,682,259 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01736,991,588 - 36,995,866 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41740,429,806 - 40,434,083 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11740,432,755 - 40,436,859 (+)NCBI
Celera1733,517,087 - 33,521,364 (+)NCBICelera
Cytogenetic Map17p12NCBI
LOC102014998
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554688,331,153 - 8,338,628 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554688,331,153 - 8,338,628 (+)NCBIChiLan1.0ChiLan1.0
LOC100974890
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22035,192,052 - 35,197,971 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11937,188,573 - 37,194,492 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01926,139,335 - 26,145,231 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11934,905,765 - 34,911,712 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1934,905,765 - 34,911,712 (-)Ensemblpanpan1.1panPan2
UQCRFS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11122,035,193 - 122,038,032 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1122,035,197 - 122,037,759 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1121,336,791 - 121,339,788 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01122,668,156 - 122,671,153 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1122,668,169 - 122,672,983 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11122,243,598 - 122,246,656 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01121,850,901 - 121,854,019 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01122,914,720 - 122,918,053 (+)NCBIUU_Cfam_GSD_1.0
LOC100522678
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl639,364,890 - 39,373,872 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1639,366,761 - 39,373,876 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2634,525,752 - 34,530,705 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103234417
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1624,293,640 - 24,298,983 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl624,293,920 - 24,299,043 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660731,814,696 - 1,820,587 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101708594
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247944,430,723 - 4,435,457 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247944,428,339 - 4,435,363 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005330650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005330650   ⟹   XP_005330707
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244093495,595,723 - 5,600,927 (-)NCBI
SpeTri2.0NW_0049365706,044,969 - 6,051,046 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005330707 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010677.2
GenBank Protein KAG3255746 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005330707   ⟸   XM_005330650
- UniProtKB: I3MI69 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Rieske


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011909 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011906.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.270 UniProtKB/TrEMBL
  2.102.10.10 UniProtKB/TrEMBL
InterPro bc1_Rieske_TM_sf UniProtKB/TrEMBL
  Globular_prot_asu/bsu UniProtKB/TrEMBL
  Rieske_2Fe-2S UniProtKB/TrEMBL
  Rieske_2Fe-2S_sf UniProtKB/TrEMBL
  Rieske_Fe-S_prot UniProtKB/TrEMBL
  Rieske_Fe-S_prot_C UniProtKB/TrEMBL
  Rieske_TM UniProtKB/TrEMBL
  Ubiqinol_cyt_c_Rdtase_N UniProtKB/TrEMBL
  Ubiquinol_cyt_c_Rdtase_Fe-S-su UniProtKB/TrEMBL
NCBI Gene LOC101959727 ENTREZGENE
PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL-RELATED UniProtKB/TrEMBL
  PTHR10134 UniProtKB/TrEMBL
Pfam Rieske UniProtKB/TrEMBL
  Ubiq-Cytc-red_N UniProtKB/TrEMBL
  UCR_TM UniProtKB/TrEMBL
PRINTS RIESKE UniProtKB/TrEMBL
PROSITE RIESKE UniProtKB/TrEMBL
Superfamily-SCOP ISP transmembrane anchor UniProtKB/TrEMBL
  SSF50022 UniProtKB/TrEMBL
  SSF56568 UniProtKB/TrEMBL
UniProt I3MI69 ENTREZGENE, UniProtKB/TrEMBL