Mmp15 (matrix metallopeptidase 15) - Rat Genome Database

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Gene: Mmp15 (matrix metallopeptidase 15) Ictidomys tridecemlineatus
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Symbol: Mmp15
Name: matrix metallopeptidase 15
RGD ID: 12490155
Description: INVOLVED IN endodermal cell differentiation (ortholog); response to estradiol (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Liver Reperfusion Injury (ortholog); Mammary Neoplasms, Experimental (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: matrix metalloproteinase-15
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934949,617,444 - 49,636,491 (-)NCBI
SpeTri2.0NW_0049364759,951,876 - 9,971,631 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
Mmp15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934949,617,444 - 49,636,491 (-)NCBI
SpeTri2.0NW_0049364759,951,876 - 9,971,631 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MMP15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1658,025,754 - 58,046,901 (+)EnsemblGRCh38hg38GRCh38
GRCh381658,025,754 - 58,046,901 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371658,059,658 - 58,080,805 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361656,616,783 - 56,638,306 (+)NCBINCBI36hg18NCBI36
Build 341656,616,782 - 56,638,303NCBI
Celera1642,556,594 - 42,578,117 (+)NCBI
Cytogenetic Map16q21NCBI
HuRef1643,926,416 - 43,947,940 (+)NCBIHuRef
CHM1_11659,466,544 - 59,487,878 (+)NCBICHM1_1
Mmp15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39896,078,924 - 96,100,921 (+)NCBIGRCm39mm39
GRCm39 Ensembl896,078,896 - 96,101,708 (+)Ensembl
GRCm38895,352,296 - 95,374,293 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl895,352,268 - 95,375,080 (+)EnsemblGRCm38mm10GRCm38
MGSCv37897,876,237 - 97,898,193 (+)NCBIGRCm37mm9NCBIm37
MGSCv36898,241,466 - 98,263,422 (+)NCBImm8
Celera899,673,352 - 99,695,550 (+)NCBICelera
Cytogenetic Map8C5NCBI
cM Map847.12NCBI
Mmp15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2199,663,449 - 9,684,943 (-)NCBI
Rnor_6.0 Ensembl1910,079,765 - 10,101,451 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01910,079,881 - 10,101,380 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01910,064,056 - 10,085,300 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41910,122,553 - 10,143,853 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11910,128,673 - 10,167,980 (-)NCBI
Celera199,556,223 - 9,577,713 (-)NCBICelera
Cytogenetic Map19p13NCBI
Mmp15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543315,584,780 - 15,601,739 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543315,584,206 - 15,603,162 (+)NCBIChiLan1.0ChiLan1.0
MMP15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11657,436,611 - 57,457,122 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1657,433,813 - 57,457,122 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01638,304,856 - 38,326,193 (+)NCBIMhudiblu_PPA_v0panPan3
MMP15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1258,501,783 - 58,512,507 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl258,504,848 - 58,512,371 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha255,133,201 - 55,153,695 (-)NCBI
ROS_Cfam_1.0259,042,165 - 59,062,706 (-)NCBI
UMICH_Zoey_3.1255,873,315 - 55,893,796 (-)NCBI
UNSW_CanFamBas_1.0256,881,102 - 56,901,624 (-)NCBI
UU_Cfam_GSD_1.0257,774,141 - 57,794,621 (-)NCBI
MMP15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl619,890,884 - 19,918,244 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1619,890,867 - 19,912,941 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2617,937,693 - 17,958,870 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MMP15
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1543,961,288 - 43,982,182 (+)NCBI
ChlSab1.1 Ensembl543,960,891 - 43,982,261 (+)Ensembl
Mmp15
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474628,128,687 - 28,147,964 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005318238   ⟹   XP_005318295
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934949,617,444 - 49,636,491 (-)NCBI
SpeTri2.0NW_0049364759,951,876 - 9,971,631 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040278778   ⟹   XP_040134712
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934949,617,444 - 49,635,492 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005318295 (Get FASTA)   NCBI Sequence Viewer  
  XP_040134712 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005318295   ⟸   XM_005318238
- Peptide Label: isoform X1
- UniProtKB: I3M0C8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040134712   ⟸   XM_040278778
- Peptide Label: isoform X2
Protein Domains
ZnMc


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002405 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000002152 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002406 UniProtKB/TrEMBL
Gene3D-CATH 2.110.10.10 UniProtKB/TrEMBL
  3.40.390.10 UniProtKB/TrEMBL
InterPro Hemopexin-like_dom UniProtKB/TrEMBL
  Hemopexin-like_dom_sf UniProtKB/TrEMBL
  Hemopexin-like_repeat UniProtKB/TrEMBL
  Hemopexin_CS UniProtKB/TrEMBL
  M10A_MMP UniProtKB/TrEMBL
  MetalloPept_cat_dom_sf UniProtKB/TrEMBL
  MMP15 UniProtKB/TrEMBL
  Pept_M10_metallopeptidase UniProtKB/TrEMBL
  Pept_M10A UniProtKB/TrEMBL
  Pept_M10A_metallopeptidase_C UniProtKB/TrEMBL
  Pept_M10A_Zn_BS UniProtKB/TrEMBL
  Peptidase_Metallo UniProtKB/TrEMBL
  Peptidoglycan-bd-like UniProtKB/TrEMBL
  PGBD-like_sf UniProtKB/TrEMBL
NCBI Gene Mmp15 ENTREZGENE
PANTHER PTHR10201:SF25 UniProtKB/TrEMBL
Pfam DUF3377 UniProtKB/TrEMBL
  Hemopexin UniProtKB/TrEMBL
  Peptidase_M10 UniProtKB/TrEMBL
  PG_binding_1 UniProtKB/TrEMBL
PIRSF Peptidase_M10A_matrix UniProtKB/TrEMBL
PRINTS MATRIXIN UniProtKB/TrEMBL
PROSITE CYSTEINE_SWITCH UniProtKB/TrEMBL
  HEMOPEXIN UniProtKB/TrEMBL
  HEMOPEXIN_2 UniProtKB/TrEMBL
SMART SM00120 UniProtKB/TrEMBL
  ZnMc UniProtKB/TrEMBL
Superfamily-SCOP SSF47090 UniProtKB/TrEMBL
  SSF50923 UniProtKB/TrEMBL
UniProt I3M0C8 ENTREZGENE, UniProtKB/TrEMBL