Strn4 (striatin 4) - Rat Genome Database

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Gene: Strn4 (striatin 4) Ictidomys tridecemlineatus
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Symbol: Strn4
Name: striatin 4
RGD ID: 12489675
Description: ENCODES a protein that exhibits armadillo repeat domain binding (ortholog); protein domain specific binding (ortholog); protein phosphatase 2A binding (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2I (ortholog); congenital muscular dystrophy-dystroglycanopathy type A5 (ortholog); Walker-Warburg syndrome (ortholog); FOUND IN dendritic spine (ortholog); FAR/SIN/STRIPAK complex (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: striatin-4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934918,935,553 - 18,953,098 (-)NCBI
SpeTri2.0NW_004936664553,682 - 574,240 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Strn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934918,935,553 - 18,953,098 (-)NCBI
SpeTri2.0NW_004936664553,682 - 574,240 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STRN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1946,719,511 - 46,746,994 (-)EnsemblGRCh38hg38GRCh38
GRCh381946,719,509 - 46,746,475 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371947,222,768 - 47,249,707 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361951,914,608 - 51,941,560 (-)NCBINCBI36hg18NCBI36
Build 341951,914,609 - 51,941,527NCBI
Celera1944,026,298 - 44,053,250 (-)NCBI
Cytogenetic Map19q13.32NCBI
HuRef1943,647,696 - 43,674,467 (-)NCBIHuRef
CHM1_11947,224,668 - 47,251,617 (-)NCBICHM1_1
Strn4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39716,549,814 - 16,574,856 (+)NCBIGRCm39mm39
GRCm39 Ensembl716,549,814 - 16,574,856 (+)Ensembl
GRCm38716,815,889 - 16,840,931 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl716,815,889 - 16,840,931 (+)EnsemblGRCm38mm10GRCm38
MGSCv37717,401,238 - 17,426,280 (+)NCBIGRCm37mm9NCBIm37
MGSCv36715,974,411 - 15,999,425 (+)NCBImm8
Celera714,013,892 - 14,038,921 (+)NCBICelera
Cytogenetic Map7A2NCBI
Strn4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2177,482,267 - 77,511,862 (+)NCBI
Rnor_6.0 Ensembl178,735,678 - 78,765,692 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0178,739,930 - 78,765,696 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0179,983,369 - 80,012,891 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4177,140,308 - 77,166,074 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1177,218,418 - 77,244,183 (+)NCBI
Celera171,971,158 - 71,996,922 (+)NCBICelera
Cytogenetic Map1q21NCBI
Strn4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955574752,848 - 771,666 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955574752,848 - 771,664 (-)NCBIChiLan1.0ChiLan1.0
STRN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11952,240,880 - 52,260,241 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1952,240,880 - 52,260,241 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01943,711,834 - 43,738,742 (-)NCBIMhudiblu_PPA_v0panPan3
STRN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11109,176,955 - 109,203,875 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1109,176,983 - 109,202,591 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1108,656,782 - 108,683,677 (+)NCBI
ROS_Cfam_1.01109,703,457 - 109,730,350 (+)NCBI
UMICH_Zoey_3.11109,380,580 - 109,407,472 (+)NCBI
UNSW_CanFamBas_1.01109,014,768 - 109,041,665 (+)NCBI
UU_Cfam_GSD_1.01109,883,463 - 109,910,358 (+)NCBI
STRN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,601,934 - 52,627,902 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,601,934 - 52,627,910 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,922,599 - 47,948,577 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STRN4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1640,073,924 - 40,100,822 (-)NCBI
ChlSab1.1 Ensembl640,075,007 - 40,100,885 (-)Ensembl
Strn4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248326,858,107 - 6,883,514 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013363512   ⟹   XP_013218966
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934918,936,534 - 18,952,606 (-)NCBI
SpeTri2.0NW_004936664553,682 - 574,240 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040279088   ⟹   XP_040135022
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934918,935,553 - 18,953,098 (-)NCBI
RefSeq Acc Id: XM_040279089   ⟹   XP_040135023
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934918,935,553 - 18,953,098 (-)NCBI
RefSeq Acc Id: XM_040279090   ⟹   XP_040135024
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934918,935,553 - 18,952,444 (-)NCBI
Protein Sequences
Protein RefSeqs XP_013218966 (Get FASTA)   NCBI Sequence Viewer  
  XP_040135022 (Get FASTA)   NCBI Sequence Viewer  
  XP_040135023 (Get FASTA)   NCBI Sequence Viewer  
  XP_040135024 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013218966   ⟸   XM_013363512
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_040135023   ⟸   XM_040279089
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040135022   ⟸   XM_040279088
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040135024   ⟸   XM_040279090
- Peptide Label: isoform X4
Protein Domains
WD_REPEATS_REGION


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025660 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000015349 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028838 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  Striatin_N UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Strn4 ENTREZGENE
Pfam Striatin UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt I3MTA4_ICTTR UniProtKB/TrEMBL