Prok2 (prokineticin 2) - Rat Genome Database

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Gene: Prok2 (prokineticin 2) Ictidomys tridecemlineatus
Analyze
Symbol: Prok2
Name: prokineticin 2
RGD ID: 12489311
Description: ENCODES a protein that exhibits G protein-coupled receptor binding (ortholog); INVOLVED IN circadian rhythm (ortholog); ASSOCIATED WITH amenorrhea (ortholog); disorder of sexual development (ortholog); genetic disease (ortholog); FOUND IN extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: prokineticin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049423,298,129 - 3,310,006 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366033,299,736 - 3,310,011 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366033,299,736 - 3,419,539 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Prok2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049423,298,129 - 3,310,006 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366033,299,736 - 3,310,011 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366033,299,736 - 3,419,539 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PROK2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38371,771,655 - 71,785,148 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl371,771,655 - 71,785,206 (-)EnsemblGRCh38hg38GRCh38
GRCh37371,820,806 - 71,834,299 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36371,903,497 - 71,916,902 (-)NCBINCBI36Build 36hg18NCBI36
Build 34371,903,496 - 71,916,902NCBI
Celera371,751,377 - 71,764,927 (-)NCBICelera
Cytogenetic Map3p13NCBI
HuRef371,822,789 - 71,836,340 (-)NCBIHuRef
CHM1_1371,772,193 - 71,785,741 (-)NCBICHM1_1
T2T-CHM13v2.0371,810,890 - 71,824,379 (-)NCBIT2T-CHM13v2.0
Prok2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39699,687,833 - 99,703,368 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl699,688,260 - 99,703,353 (-)EnsemblGRCm39 Ensembl
GRCm38699,711,299 - 99,726,392 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl699,711,299 - 99,726,392 (-)EnsemblGRCm38mm10GRCm38
MGSCv37699,661,293 - 99,676,386 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36699,676,762 - 99,691,855 (-)NCBIMGSCv36mm8
Celera6101,575,424 - 101,590,523 (-)NCBICelera
Cytogenetic Map6D3NCBI
cM Map646.29NCBI
Prok2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84133,903,210 - 133,918,126 (-)NCBIGRCr8
mRatBN7.24132,346,681 - 132,361,754 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4132,347,103 - 132,361,385 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4137,761,400 - 137,776,228 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04133,542,182 - 133,557,004 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04132,160,453 - 132,175,271 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04132,157,556 - 132,171,244 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4132,157,556 - 132,171,153 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04196,648,637 - 196,662,531 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44134,561,300 - 134,574,487 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14134,806,140 - 134,819,328 (-)NCBI
Celera4121,207,301 - 121,220,343 (-)NCBICelera
Cytogenetic Map4q34NCBI
Prok2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542116,325,519 - 16,337,980 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542116,325,519 - 16,339,458 (+)NCBIChiLan1.0ChiLan1.0
PROK2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2271,729,996 - 71,744,472 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1371,734,783 - 71,749,259 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0371,711,334 - 71,724,865 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1373,067,609 - 73,080,897 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl373,068,599 - 73,080,897 (-)Ensemblpanpan1.1panPan2
PROK2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2020,223,646 - 20,237,384 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02020,280,503 - 20,294,239 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2020,280,467 - 20,294,206 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12019,967,457 - 19,981,222 (+)NCBIUMICH_Zoey_3.1
UU_Cfam_GSD_1.02020,382,640 - 20,396,378 (+)NCBIUU_Cfam_GSD_1.0
PROK2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1353,169,524 - 53,185,171 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11353,169,040 - 53,184,695 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21358,857,144 - 58,872,870 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PROK2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12232,721,188 - 32,739,348 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041134,040,511 - 134,054,121 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prok2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247736,307,653 - 6,323,208 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247736,310,025 - 6,323,245 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005333892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000000970   ⟹   ENSSTOP00000000869
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366033,299,736 - 3,310,011 (-)Ensembl
RefSeq Acc Id: XM_005333892   ⟹   XP_005333949
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049423,298,129 - 3,310,006 (-)NCBI
SpeTri2.0NW_0049366033,299,736 - 3,419,539 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005333949 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000000869.3
GenBank Protein KAG3294959 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005333949   ⟸   XM_005333892
- UniProtKB: I3LXP8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000000869   ⟸   ENSSTOT00000000970
Protein Domains
Prokineticin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000976 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000970.3 UniProtKB/TrEMBL
Gene3D-CATH Lipase, subunit A UniProtKB/TrEMBL
InterPro Prokineticin UniProtKB/TrEMBL
  Prokineticin_domain UniProtKB/TrEMBL
NCBI Gene Prok2 ENTREZGENE
PANTHER PROKINETICIN-2 UniProtKB/TrEMBL
  PTHR18821 UniProtKB/TrEMBL
Pfam Prokineticin UniProtKB/TrEMBL
Superfamily-SCOP Colipase-like UniProtKB/TrEMBL
UniProt I3LXP8 ENTREZGENE, UniProtKB/TrEMBL