Tbpl2 (TATA-box binding protein like 2) - Rat Genome Database

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Gene: Tbpl2 (TATA-box binding protein like 2) Ictidomys tridecemlineatus
Analyze
Symbol: Tbpl2
Name: TATA-box binding protein like 2
RGD ID: 12489135
Description: ENCODES a protein that exhibits DNA binding (inferred); RNA polymerase II general transcription initiation factor activity (inferred); INVOLVED IN DNA-templated transcription initiation (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); female germ cell nucleus (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TATA box-binding protein-like 2; TATA box-binding protein-like protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864073,971,972 - 73,994,012 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936495197,687 - 219,477 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936495197,687 - 219,727 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tbpl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864073,971,972 - 73,994,012 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936495197,687 - 219,477 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936495197,687 - 219,727 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBPL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381455,414,210 - 55,440,616 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1455,414,210 - 55,456,726 (-)EnsemblGRCh38hg38GRCh38
GRCh371455,880,928 - 55,907,334 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361454,950,681 - 54,977,016 (-)NCBINCBI36Build 36hg18NCBI36
Build 341454,950,684 - 54,977,016NCBI
Celera1435,930,314 - 35,956,646 (-)NCBICelera
Cytogenetic Map14q22.3NCBI
HuRef1436,044,117 - 36,070,458 (-)NCBIHuRef
CHM1_11455,819,427 - 55,845,666 (-)NCBICHM1_1
T2T-CHM13v2.01449,619,941 - 49,646,349 (-)NCBIT2T-CHM13v2.0
Tbpl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39223,961,378 - 23,986,607 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl223,961,733 - 23,986,607 (-)EnsemblGRCm39 Ensembl
GRCm38224,071,366 - 24,096,595 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl224,071,721 - 24,096,595 (-)EnsemblGRCm38mm10GRCm38
MGSCv37223,927,241 - 23,952,115 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36223,893,730 - 23,918,604 (-)NCBIMGSCv36mm8
Celera223,801,598 - 23,826,565 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map216.14NCBI
Tbpl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8327,170,209 - 27,191,665 (-)NCBIGRCr8
mRatBN7.236,771,825 - 6,793,281 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl36,772,419 - 6,793,231 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx39,866,546 - 9,887,327 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0318,452,785 - 18,473,566 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0316,642,588 - 16,663,369 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.031,095,883 - 1,116,677 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl31,095,883 - 1,116,677 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.031,087,370 - 1,108,164 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.432,253,775 - 2,274,569 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera31,610,514 - 1,631,308 (-)NCBICelera
Cytogenetic Map3p13NCBI
Tbpl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546613,871,562 - 13,897,302 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546613,869,429 - 13,897,302 (+)NCBIChiLan1.0ChiLan1.0
TBPL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21556,535,651 - 56,563,640 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11455,752,165 - 55,780,154 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01436,001,021 - 36,027,796 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11454,274,367 - 54,301,003 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1454,274,367 - 54,301,003 (-)Ensemblpanpan1.1panPan2
TBPL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1831,235,996 - 31,269,777 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl831,236,285 - 31,260,936 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha831,002,723 - 31,027,391 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0831,495,114 - 31,518,043 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl831,495,067 - 31,524,831 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1831,097,962 - 31,122,802 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0831,174,633 - 31,199,174 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0831,540,208 - 31,565,673 (-)NCBIUU_Cfam_GSD_1.0
TBPL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1184,745,799 - 184,792,502 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11184,745,719 - 184,772,051 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21205,296,071 - 205,384,145 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TBPL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12432,607,375 - 32,633,190 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605320,828,867 - 20,854,033 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tbpl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624884222,198 - 256,319 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624884221,409 - 256,396 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005322878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000015195   ⟹   ENSSTOP00000013615
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936495197,687 - 219,477 (-)Ensembl
RefSeq Acc Id: XM_005322878   ⟹   XP_005322935
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864073,971,972 - 73,994,012 (+)NCBI
SpeTri2.0NW_004936495197,687 - 219,727 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005322935 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000013615.2
GenBank Protein KAG3261393 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005322935   ⟸   XM_005322878
- UniProtKB: I3MPC0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000013615   ⟸   ENSSTOT00000015195


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015196 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015195.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.310.10 UniProtKB/TrEMBL
InterPro TBP UniProtKB/TrEMBL
  TBP_CS UniProtKB/TrEMBL
  TBP_dom_sf UniProtKB/TrEMBL
  TBP_eukaryotic UniProtKB/TrEMBL
NCBI Gene Tbpl2 ENTREZGENE
PANTHER PTHR10126 UniProtKB/TrEMBL
  TATA BOX-BINDING PROTEIN-LIKE 2 UniProtKB/TrEMBL
Pfam TBP UniProtKB/TrEMBL
PRINTS TIFACTORIID UniProtKB/TrEMBL
PROSITE TFIID UniProtKB/TrEMBL
Superfamily-SCOP TATA-box binding protein-like UniProtKB/TrEMBL
UniProt I3MPC0 ENTREZGENE, UniProtKB/TrEMBL