Plrg1 (pleiotropic regulator 1) - Rat Genome Database

Name: Plrg1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Plrg1 (pleiotropic regulator 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Plrg1

Name:

pleiotropic regulator 1

RGD ID:

12489068

Description:

INVOLVED IN positive regulation of G1/S transition of mitotic cell cycle (ortholog); protein localization to nucleus (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN DNA replication factor A complex (ortholog); Prp19 complex (ortholog); spliceosomal complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

pleiotropic regulator 1, transcript variant X1; pleiotropic regulator 1, transcript variant X2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PLRG1 (pleiotropic regulator 1)	NCBI	Ortholog
Mus musculus (house mouse):	Plrg1 (pleiotropic regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Plrg1 (pleiotropic regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Plrg1 (pleiotropic regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PLRG1 (pleiotropic regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PLRG1 (pleiotropic regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PLRG1 (pleiotropic regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PLRG1 (pleiotropic regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Plrg1 (pleiotropic regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	38,249,134 - 38,263,642 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936576	1,282,664 - 1,297,818 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936576	1,284,758 - 1,297,758 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA splicing, via spliceosome (IEA)

positive regulation of G1/S transition of mitotic cell cycle (IEA,ISO)

protein localization to nucleus (IEA,ISO)

Cellular Component

catalytic step 2 spliceosome (IEA)

DNA replication factor A complex (IEA,ISO)

fibrillar center (IEA)

nuclear membrane (IEA)

nuclear speck (IEA)

nucleoplasm (IEA)

nucleus (IEA)

precatalytic spliceosome (IEA)

Prp19 complex (IEA,ISO)

spliceosomal complex (IEA,ISO)

U2-type catalytic step 2 spliceosome (IEA)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Plrg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	38,249,134 - 38,263,642 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936576	1,282,664 - 1,297,818 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936576	1,284,758 - 1,297,758 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PLRG1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	154,535,005 - 154,550,400 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	154,535,005 - 154,550,400 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	155,456,157 - 155,471,552 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	155,677,112 - 155,690,973 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	155,815,438 - 155,827,692	NCBI
Celera	4	152,789,011 - 152,802,847 (-)	NCBI		Celera
Cytogenetic Map	4	q31.3	NCBI
HuRef	4	151,196,830 - 151,212,267 (-)	NCBI		HuRef
CHM1_1	4	155,434,061 - 155,449,498 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	157,866,774 - 157,882,170 (-)	NCBI		T2T-CHM13v2.0

Plrg1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	82,962,845 - 82,979,598 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	82,962,829 - 82,979,662 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	83,055,538 - 83,072,291 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	83,055,522 - 83,072,355 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	82,859,460 - 82,876,213 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	83,141,465 - 83,158,218 (+)	NCBI		MGSCv36	mm8
Celera	3	83,059,703 - 83,076,420 (+)	NCBI		Celera
Cytogenetic Map	3	E3	NCBI
cM Map	3	36.99	NCBI

Plrg1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	170,706,188 - 170,722,519 (+)	NCBI		GRCr8
mRatBN7.2	2	168,408,139 - 168,424,470 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	168,408,124 - 168,424,522 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	175,598,376 - 175,614,509 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	173,619,300 - 173,635,434 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	168,220,722 - 168,236,856 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	182,040,338 - 182,056,669 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	182,040,318 - 182,056,673 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	201,454,958 - 201,471,289 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	174,780,415 - 174,796,746 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	174,730,520 - 174,746,852 (+)	NCBI
Celera	2	162,434,780 - 162,451,111 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

Plrg1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955471	8,763,971 - 8,777,396 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955471	8,764,465 - 8,777,396 (-)	NCBI	ChiLan1.0	ChiLan1.0

PLRG1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	152,448,826 - 152,462,909 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	152,802,791 - 152,818,366 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	146,900,494 - 146,917,016 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	158,719,568 - 158,735,103 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	158,719,568 - 158,735,103 (-)	Ensembl	panpan1.1		panPan2

PLRG1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	52,196,998 - 52,213,378 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	52,198,635 - 52,213,239 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	52,541,437 - 52,557,901 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	52,883,804 - 52,900,253 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	52,883,814 - 52,900,312 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	52,138,786 - 52,155,267 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	52,243,408 - 52,259,860 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	52,557,769 - 52,574,252 (-)	NCBI		UU_Cfam_GSD_1.0

PLRG1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	74,614,893 - 74,633,102 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	74,614,925 - 74,631,072 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	79,101,263 - 79,118,985 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PLRG1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	101,080,254 - 101,096,048 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	101,079,449 - 101,096,174 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	80,735,565 - 80,751,365 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Plrg1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624858	5,801,884 - 5,818,005 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005330906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021730266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040293154	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040293155	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000010146 ⟹ ENSSTOP00000009101

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936576	1,282,664 - 1,297,818 (-)	Ensembl

RefSeq Acc Id:

XM_005330906 ⟹ XP_005330963

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405301	38,249,135 - 38,263,642 (+)	NCBI
SpeTri2.0	NW_004936576	1,284,758 - 1,297,758 (-)	NCBI

Sequence:

show sequence

ACGTCACGTCCGGCGATAGGGCTCCGGATTCCGGAAGAGGCTGAAGAGTGGCGGCGGCTGTTTC
TGCGTTGGCGATAAGTGTTTCTCCGTTGCCAGAGGGGTCAGATAAACGGAAGCGTCATGGTCGA
GGAAGTACAGAAACATTCTGTGCACACACTTGTGTTCAGGTCACTGAAGAGAACCCATGACATG
TTTGTAGCTGATAATGGAAAACCTGTGCCTTTGGATGAAGAGAGTCACAAACGAAAAATGGCAA
TCAAGCTCCGTAATGAGTACGGTCCTGTGTTGCATATGCCTACTTCAAAAGAAAATCTTAAAGA
GAAAGGCCCTCAGAATGCAACGGATTCATACGGTCATAAACAGTATCCTGCCAATCAAGGACAA
GAAGTTGAGTATTTGGTTACAGGTACACATCCATATCCACCAGGACCTGGAGTTGCTTTGACAG
CGGATACTAAGGTCCAAAGAATGCCCAGCGAATCAGCTGCACAGTCCTTGGCAGTGGCATTACC
TTCTTCCCAGGCCAGAGTTGAGGGAAATCGTACTGCGCCTGGTGGAACTGAATATCGACATCCT
GGGGCTTCTGACCGTTCACAACCTACAGTGATGAATTCAATGGTTATGGAAACTGGCAATACTA
AGAACTCTGCGCTGATGGCCAAAAAAGCACCTACAATGCCAAAACCCCAGTGGCACCCACCATG
GAAACTCTATAGGGTTATCAGTGGGCATCTTGGTTGGGTTCGATGTATTGCTGTGGAACCTGGA
AATCAGTGGTTTGTTACTGGATCTGCTGATAGAACTATAAAGATCTGGGACCTGGCCAGTGGCA
AGTTAAAACTCTCGTTGACCGGGCATATCAGTACAGTTCGAGGTGTGATAGTAAGCACAAGGAG
CCCATACCTGTTTTCTTGTGGAGAAGACAAACAAGTAAAATGCTGGGATCTTGAATATAATAAG
GTTATAAGGCATTATCATGGACATCTAAGTGCAGTATATGGTTTGGATTTGCATCCAACAATCG
ATGTGCTGGTAACCTGTAGTCGAGATTCAACTGCTCGGATTTGGGATGTGAGAACTAAAGCCAG
TGTACACACATTATCTGGACATACAAATGCAGTTGCTACAGTGAGGTGTCAAGCTGCAGAACCA
CAAATTATTACTGGAAGCCATGACACTACAATACGATTATGGGATCTGGTGGCTGGAAAGACAA
GAGTGACATTAACAAATCATAAGAAATCAGTCAGGGCTGTGGTTTTACATCCACGACATTACAC
GTTTGCATCTGGTTCTCCAGATAACATAAAGCAGTGGAAATTCCCTGATGGAAGTTTTATTCAA
AATCTTTCTGGTCATAATGCTATTATTAACACATTGACAGTAAATTCTGATGGAGTGCTTGTAT
CTGGAGCTGACAATGGCACTATGCATCTTTGGGATTGGAGAACTGGCTACAATTTTCAGAGAGT
TCATGCAGCTGTGCAGCCTGGGTCTTTGGACAGTGAATCAGGAATATTTGCTTGTGCTTTTGAT
CAGTCTGAAAGTCGGTTATTAACAGCTGAAGCTGATAAAACCATTAAAGTGTACAGAGAGGATG
ATACGGCAACAGAAGAAACTCATCCAGTCAGCTGGAAACCAGAAATTATCAAGCGAAAGAGATT
TTAATGTGGCATTGTCTTCATGGTGGTTTTTTTTTTTTTTTTTTTTTTAAGCTTGGCATTGATG
AGGATGTCGGTCATTTTGTGTTTTGGCGGGAATGTAAAGCAGAAACTCATTTACTGGAATCATT
GCTGCTTAATATTTTACAATAAACTGTCCCCTATGCCC

hide sequence

RefSeq Acc Id:

XM_040293154 ⟹ XP_040149088

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405301	38,249,134 - 38,263,642 (+)	NCBI

RefSeq Acc Id:

XM_040293155 ⟹ XP_040149089

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405301	38,249,159 - 38,263,642 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005330963	(Get FASTA)	NCBI Sequence Viewer
	XP_040149088	(Get FASTA)	NCBI Sequence Viewer
	XP_040149089	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000009101.2
GenBank Protein	KAG3276048	(Get FASTA)	NCBI Sequence Viewer
	KAG3276049	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005330963 ⟸ XM_005330906
- Peptide Label:	isoform X1
- UniProtKB:	I3MEX2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVEEVQKHSVHTLVFRSLKRTHDMFVADNGKPVPLDEESHKRKMAIKLRNEYGPVLHMPTSKEN LKEKGPQNATDSYGHKQYPANQGQEVEYLVTGTHPYPPGPGVALTADTKVQRMPSESAAQSLAV ALPSSQARVEGNRTAPGGTEYRHPGASDRSQPTVMNSMVMETGNTKNSALMAKKAPTMPKPQWH PPWKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVS TRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWDVRT KASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPR HYTFASGSPDNIKQWKFPDGSFIQNLSGHNAIINTLTVNSDGVLVSGADNGTMHLWDWRTGYNF QRVHAAVQPGSLDSESGIFACAFDQSESRLLTAEADKTIKVYREDDTATEETHPVSWKPEIIKR KRF hide sequence

RefSeq Acc Id:	XP_040149088 ⟸ XM_040293154
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040149089 ⟸ XM_040293155
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSSTOP00000009101 ⟸ ENSSTOT00000010146

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000010145	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000010146.3	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
InterPro	G-protein_beta_WD-40_rep	UniProtKB/TrEMBL
	Prp46/PLRG1-like	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_CS	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Plrg1	ENTREZGENE
PANTHER	PLEIOTROPIC REGULATOR 1	UniProtKB/TrEMBL
	PTHR19923	UniProtKB/TrEMBL
Pfam	WD40	UniProtKB/TrEMBL
PRINTS	GPROTEINBRPT	UniProtKB/TrEMBL
PROSITE	WD_REPEATS_1	UniProtKB/TrEMBL
	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
SMART	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50978	UniProtKB/TrEMBL
UniProt	I3MEX2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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